Dethiosulfovibrio peptidovorans DSM 11002

DOE Joint Genome Institute

GC Content: 54.4%, Released Date: April 30, 2009 #18010

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABTR01000001
412.3 KB
452 CDS

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whole genome shotgun sequence
NZ_ABTR01000002
286.9 KB
302 CDS

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whole genome shotgun sequence
NZ_ABTR01000003
229.2 KB
233 CDS

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whole genome shotgun sequence
NZ_ABTR01000004
180.4 KB
174 CDS

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whole genome shotgun sequence
NZ_ABTR01000005
160.1 KB
149 CDS

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whole genome shotgun sequence
NZ_ABTR01000006
146.4 KB
149 CDS

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whole genome shotgun sequence
NZ_ABTR01000007
141.1 KB
149 CDS

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whole genome shotgun sequence
NZ_ABTR01000008
98.8 KB
99 CDS

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whole genome shotgun sequence
NZ_ABTR01000009
98.3 KB
104 CDS

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whole genome shotgun sequence
NZ_ABTR01000010
97.8 KB
80 CDS

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whole genome shotgun sequence
NZ_ABTR01000011
69.6 KB
73 CDS

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whole genome shotgun sequence
NZ_ABTR01000012
66.6 KB
65 CDS

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whole genome shotgun sequence
NZ_ABTR01000013
63.3 KB
71 CDS

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whole genome shotgun sequence
NZ_ABTR01000014
62.4 KB
64 CDS

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whole genome shotgun sequence
NZ_ABTR01000015
50.2 KB
52 CDS

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whole genome shotgun sequence
NZ_ABTR01000016
46.0 KB
49 CDS

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whole genome shotgun sequence
NZ_ABTR01000017
41.0 KB
41 CDS

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whole genome shotgun sequence
NZ_ABTR01000018
36.5 KB
40 CDS

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whole genome shotgun sequence
NZ_ABTR01000019
33.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ABTR01000020
32.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ABTR01000021
19.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ABTR01000022
17.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABTR01000023
17.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABTR01000024
17.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ABTR01000025
16.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABTR01000026
8.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABTR01000027
7.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ABTR01000028
5.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ABTR01000029
4.5 KB
7 CDS

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Taxonomy

External Links

Dethiosulfovibrio peptidovorans DSM 11002

Search Genome

Sequences

PubMed Search for Dethiosulfovibrio peptidovorans DSM 11002

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