Dokdonia donghaensis MED134

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 38.2%, Released Date: Jan. 27, 2006 #18012

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAMZ01000001
713.0 KB
651 CDS

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whole genome shotgun sequence
NZ_AAMZ01000002
671.5 KB
611 CDS

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whole genome shotgun sequence
NZ_AAMZ01000003
372.9 KB
346 CDS

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whole genome shotgun sequence
NZ_AAMZ01000004
286.6 KB
270 CDS

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whole genome shotgun sequence
NZ_AAMZ01000005
238.5 KB
211 CDS

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whole genome shotgun sequence
NZ_AAMZ01000006
219.0 KB
200 CDS

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whole genome shotgun sequence
NZ_AAMZ01000007
179.2 KB
156 CDS

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whole genome shotgun sequence
NZ_AAMZ01000008
148.2 KB
161 CDS

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whole genome shotgun sequence
NZ_AAMZ01000009
147.1 KB
125 CDS

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whole genome shotgun sequence
NZ_AAMZ01000010
134.2 KB
121 CDS

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whole genome shotgun sequence
NZ_AAMZ01000011
76.7 KB
65 CDS

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whole genome shotgun sequence
NZ_AAMZ01000012
21.3 KB
21 CDS

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whole genome shotgun sequence
NZ_AAMZ01000013
9.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMZ01000014
3.9 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMZ01000015
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMZ01000016
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMZ01000017
1.0 KB
0 CDS

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References

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Gomez-Consarnau,L., Gonzalez,J.M., Coll-Llado,M., Gourdon,P., Pascher,T., Neutze,R., Pedros-Alio,C. and Pinhassi,J. Nature 445 (7124), 210-213 (2007)
PubMed, PubGet, HubMed
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Gomez-Consarnau,L., Gonzalez,J.M., Coll-Llado,M., Gourdon,P., Pascher,T., Neutze,R., Pedros-Alio,C. and Pinhassi,J. Nature 445 (7124), 210-213 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Dokdonia donghaensis MED134

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Sequences

References

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