Enterococcus faecalis DS5

Broad Institute

Released Date: June 12, 2009 #18028

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACAI01000001
820 bytes
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whole genome shotgun sequence
NZ_ACAI01000002
538 bytes
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whole genome shotgun sequence
NZ_ACAI01000003
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000004
14.4 KB
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whole genome shotgun sequence
NZ_ACAI01000005
2.1 KB
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whole genome shotgun sequence
NZ_ACAI01000006
716 bytes
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whole genome shotgun sequence
NZ_ACAI01000007
744 bytes
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whole genome shotgun sequence
NZ_ACAI01000008
621 bytes
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whole genome shotgun sequence
NZ_ACAI01000009
1.0 KB
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whole genome shotgun sequence
NZ_ACAI01000010
654 bytes
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whole genome shotgun sequence
NZ_ACAI01000011
600 bytes
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whole genome shotgun sequence
NZ_ACAI01000012
609 bytes
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whole genome shotgun sequence
NZ_ACAI01000013
550 bytes
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whole genome shotgun sequence
NZ_ACAI01000014
1.0 KB
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whole genome shotgun sequence
NZ_ACAI01000015
523 bytes
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whole genome shotgun sequence
NZ_ACAI01000016
1.7 KB
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whole genome shotgun sequence
NZ_ACAI01000017
515 bytes
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whole genome shotgun sequence
NZ_ACAI01000018
1.3 KB
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whole genome shotgun sequence
NZ_ACAI01000019
17.5 KB
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whole genome shotgun sequence
NZ_ACAI01000020
73.0 KB
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whole genome shotgun sequence
NZ_ACAI01000021
33.1 KB
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whole genome shotgun sequence
NZ_ACAI01000022
15.1 KB
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whole genome shotgun sequence
NZ_ACAI01000023
37.9 KB
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whole genome shotgun sequence
NZ_ACAI01000024
8.3 KB
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whole genome shotgun sequence
NZ_ACAI01000025
53.2 KB
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whole genome shotgun sequence
NZ_ACAI01000026
63.1 KB
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whole genome shotgun sequence
NZ_ACAI01000027
16.1 KB
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whole genome shotgun sequence
NZ_ACAI01000028
6.9 KB
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whole genome shotgun sequence
NZ_ACAI01000029
19.7 KB
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whole genome shotgun sequence
NZ_ACAI01000030
3.2 KB
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whole genome shotgun sequence
NZ_ACAI01000031
1.8 KB
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whole genome shotgun sequence
NZ_ACAI01000032
28.6 KB
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whole genome shotgun sequence
NZ_ACAI01000033
105.1 KB
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whole genome shotgun sequence
NZ_ACAI01000034
47.8 KB
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whole genome shotgun sequence
NZ_ACAI01000035
80.3 KB
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whole genome shotgun sequence
NZ_ACAI01000036
1.1 KB
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whole genome shotgun sequence
NZ_ACAI01000037
1.1 KB
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whole genome shotgun sequence
NZ_ACAI01000038
618 bytes
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whole genome shotgun sequence
NZ_ACAI01000039
1.6 KB
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whole genome shotgun sequence
NZ_ACAI01000040
82.9 KB
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whole genome shotgun sequence
NZ_ACAI01000041
857 bytes
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whole genome shotgun sequence
NZ_ACAI01000042
739 bytes
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whole genome shotgun sequence
NZ_ACAI01000043
3.7 KB
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whole genome shotgun sequence
NZ_ACAI01000044
62.8 KB
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whole genome shotgun sequence
NZ_ACAI01000045
83.6 KB
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whole genome shotgun sequence
NZ_ACAI01000046
68.7 KB
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whole genome shotgun sequence
NZ_ACAI01000047
24.3 KB
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whole genome shotgun sequence
NZ_ACAI01000048
1.4 KB
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whole genome shotgun sequence
NZ_ACAI01000049
31.9 KB
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whole genome shotgun sequence
NZ_ACAI01000050
81.3 KB
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whole genome shotgun sequence
NZ_ACAI01000051
19.9 KB
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whole genome shotgun sequence
NZ_ACAI01000052
15.0 KB
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whole genome shotgun sequence
NZ_ACAI01000053
25.1 KB
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whole genome shotgun sequence
NZ_ACAI01000054
27.6 KB
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whole genome shotgun sequence
NZ_ACAI01000055
6.4 KB
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whole genome shotgun sequence
NZ_ACAI01000056
162.7 KB
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whole genome shotgun sequence
NZ_ACAI01000057
7.4 KB
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whole genome shotgun sequence
NZ_ACAI01000058
24.0 KB
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whole genome shotgun sequence
NZ_ACAI01000059
133.2 KB
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whole genome shotgun sequence
NZ_ACAI01000060
26.4 KB
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whole genome shotgun sequence
NZ_ACAI01000061
29.3 KB
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whole genome shotgun sequence
NZ_ACAI01000062
37.6 KB
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whole genome shotgun sequence
NZ_ACAI01000063
13.8 KB
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whole genome shotgun sequence
NZ_ACAI01000064
64.9 KB
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whole genome shotgun sequence
NZ_ACAI01000065
7.7 KB
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whole genome shotgun sequence
NZ_ACAI01000066
949 bytes
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whole genome shotgun sequence
NZ_ACAI01000067
84.1 KB
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whole genome shotgun sequence
NZ_ACAI01000068
29.6 KB
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whole genome shotgun sequence
NZ_ACAI01000069
27.1 KB
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whole genome shotgun sequence
NZ_ACAI01000070
13.0 KB
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whole genome shotgun sequence
NZ_ACAI01000071
65.6 KB
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whole genome shotgun sequence
NZ_ACAI01000072
12.9 KB
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whole genome shotgun sequence
NZ_ACAI01000073
120.5 KB
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whole genome shotgun sequence
NZ_ACAI01000074
25.2 KB
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whole genome shotgun sequence
NZ_ACAI01000075
4.9 KB
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whole genome shotgun sequence
NZ_ACAI01000076
3.7 KB
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whole genome shotgun sequence
NZ_ACAI01000077
34.7 KB
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whole genome shotgun sequence
NZ_ACAI01000078
608 bytes
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whole genome shotgun sequence
NZ_ACAI01000079
1.8 KB
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whole genome shotgun sequence
NZ_ACAI01000080
695 bytes
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whole genome shotgun sequence
NZ_ACAI01000081
1.5 KB
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whole genome shotgun sequence
NZ_ACAI01000082
677 bytes
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whole genome shotgun sequence
NZ_ACAI01000083
548 bytes
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whole genome shotgun sequence
NZ_ACAI01000084
15.3 KB
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whole genome shotgun sequence
NZ_ACAI01000085
3.6 KB
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whole genome shotgun sequence
NZ_ACAI01000086
27.4 KB
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whole genome shotgun sequence
NZ_ACAI01000087
65.0 KB
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whole genome shotgun sequence
NZ_ACAI01000088
75.4 KB
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whole genome shotgun sequence
NZ_ACAI01000089
7.1 KB
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whole genome shotgun sequence
NZ_ACAI01000090
35.1 KB
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whole genome shotgun sequence
NZ_ACAI01000091
58.0 KB
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whole genome shotgun sequence
NZ_ACAI01000092
127.8 KB
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whole genome shotgun sequence
NZ_ACAI01000093
5.5 KB
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whole genome shotgun sequence
NZ_ACAI01000094
19.4 KB
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whole genome shotgun sequence
NZ_ACAI01000095
25.5 KB
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whole genome shotgun sequence
NZ_ACAI01000096
59.7 KB
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whole genome shotgun sequence
NZ_ACAI01000097
53.4 KB
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whole genome shotgun sequence
NZ_ACAI01000098
191.7 KB
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whole genome shotgun sequence
NZ_ACAI01000099
647 bytes
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whole genome shotgun sequence
NZ_ACAI01000100
613 bytes
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whole genome shotgun sequence
NZ_ACAI01000101
9.5 KB
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whole genome shotgun sequence
NZ_ACAI01000102
27.2 KB
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whole genome shotgun sequence
NZ_ACAI01000103
1.4 KB
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whole genome shotgun sequence
NZ_ACAI01000104
2.3 KB
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whole genome shotgun sequence
NZ_ACAI01000105
30.5 KB
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whole genome shotgun sequence
NZ_ACAI01000106
8.5 KB
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whole genome shotgun sequence
NZ_ACAI01000107
7.8 KB
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whole genome shotgun sequence
NZ_ACAI01000108
902 bytes
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whole genome shotgun sequence
NZ_ACAI01000109
928 bytes
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whole genome shotgun sequence
NZ_ACAI01000110
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000111
2.8 KB
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whole genome shotgun sequence
NZ_ACAI01000112
3.9 KB
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whole genome shotgun sequence
NZ_ACAI01000113
15.5 KB
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whole genome shotgun sequence
NZ_ACAI01000114
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000115
10.8 KB
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whole genome shotgun sequence
NZ_ACAI01000116
3.5 KB
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whole genome shotgun sequence
NZ_ACAI01000117
1.5 KB
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whole genome shotgun sequence
NZ_ACAI01000118
1.6 KB
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whole genome shotgun sequence
NZ_ACAI01000119
1.6 KB
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whole genome shotgun sequence
NZ_ACAI01000120
2.0 KB
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whole genome shotgun sequence
NZ_ACAI01000121
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000122
2.8 KB
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whole genome shotgun sequence
NZ_ACAI01000123
4.1 KB
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whole genome shotgun sequence
NZ_ACAI01000124
12.1 KB
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whole genome shotgun sequence
NZ_ACAI01000125
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000126
9.2 KB
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whole genome shotgun sequence
NZ_ACAI01000127
1.2 KB
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whole genome shotgun sequence
NZ_ACAI01000128
1.5 KB
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Taxonomy

External Links

Enterococcus faecalis DS5

Search Genome

Sequences

PubMed Search for Enterococcus faecalis DS5

Related Genomes