Enterococcus faecalis JH1

Broad Institute

Released Date: June 12, 2009 #18033

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACAP01000001
1.4 KB
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whole genome shotgun sequence
NZ_ACAP01000002
550 bytes
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whole genome shotgun sequence
NZ_ACAP01000003
786 bytes
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whole genome shotgun sequence
NZ_ACAP01000004
815 bytes
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whole genome shotgun sequence
NZ_ACAP01000005
815 bytes
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whole genome shotgun sequence
NZ_ACAP01000006
1.5 KB
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whole genome shotgun sequence
NZ_ACAP01000007
12.7 KB
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whole genome shotgun sequence
NZ_ACAP01000008
9.6 KB
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whole genome shotgun sequence
NZ_ACAP01000009
46.7 KB
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whole genome shotgun sequence
NZ_ACAP01000010
607 bytes
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whole genome shotgun sequence
NZ_ACAP01000011
667 bytes
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whole genome shotgun sequence
NZ_ACAP01000012
814 bytes
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whole genome shotgun sequence
NZ_ACAP01000013
5.6 KB
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whole genome shotgun sequence
NZ_ACAP01000014
892 bytes
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whole genome shotgun sequence
NZ_ACAP01000015
15.8 KB
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whole genome shotgun sequence
NZ_ACAP01000016
12.4 KB
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whole genome shotgun sequence
NZ_ACAP01000017
59.8 KB
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whole genome shotgun sequence
NZ_ACAP01000018
2.2 KB
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whole genome shotgun sequence
NZ_ACAP01000019
11.7 KB
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whole genome shotgun sequence
NZ_ACAP01000020
33.3 KB
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whole genome shotgun sequence
NZ_ACAP01000021
11.9 KB
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whole genome shotgun sequence
NZ_ACAP01000022
12.4 KB
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whole genome shotgun sequence
NZ_ACAP01000023
15.9 KB
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whole genome shotgun sequence
NZ_ACAP01000024
51.3 KB
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whole genome shotgun sequence
NZ_ACAP01000025
18.1 KB
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whole genome shotgun sequence
NZ_ACAP01000026
83.7 KB
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whole genome shotgun sequence
NZ_ACAP01000027
69.3 KB
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whole genome shotgun sequence
NZ_ACAP01000028
16.5 KB
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whole genome shotgun sequence
NZ_ACAP01000029
43.9 KB
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whole genome shotgun sequence
NZ_ACAP01000030
170.4 KB
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whole genome shotgun sequence
NZ_ACAP01000031
3.4 KB
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whole genome shotgun sequence
NZ_ACAP01000032
15.3 KB
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whole genome shotgun sequence
NZ_ACAP01000033
1.3 KB
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whole genome shotgun sequence
NZ_ACAP01000034
614 bytes
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whole genome shotgun sequence
NZ_ACAP01000035
36.0 KB
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whole genome shotgun sequence
NZ_ACAP01000036
8.8 KB
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whole genome shotgun sequence
NZ_ACAP01000037
6.1 KB
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whole genome shotgun sequence
NZ_ACAP01000038
19.2 KB
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whole genome shotgun sequence
NZ_ACAP01000039
66.1 KB
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whole genome shotgun sequence
NZ_ACAP01000040
27.2 KB
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whole genome shotgun sequence
NZ_ACAP01000041
38.9 KB
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whole genome shotgun sequence
NZ_ACAP01000042
36.0 KB
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whole genome shotgun sequence
NZ_ACAP01000043
8.7 KB
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whole genome shotgun sequence
NZ_ACAP01000044
21.2 KB
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whole genome shotgun sequence
NZ_ACAP01000045
10.1 KB
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whole genome shotgun sequence
NZ_ACAP01000046
26.2 KB
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whole genome shotgun sequence
NZ_ACAP01000047
25.9 KB
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whole genome shotgun sequence
NZ_ACAP01000048
6.4 KB
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whole genome shotgun sequence
NZ_ACAP01000049
1.3 KB
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whole genome shotgun sequence
NZ_ACAP01000050
653 bytes
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whole genome shotgun sequence
NZ_ACAP01000051
1.2 KB
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whole genome shotgun sequence
NZ_ACAP01000052
1.1 KB
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whole genome shotgun sequence
NZ_ACAP01000053
1.0 KB
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whole genome shotgun sequence
NZ_ACAP01000054
3.2 KB
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whole genome shotgun sequence
NZ_ACAP01000055
1.7 KB
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whole genome shotgun sequence
NZ_ACAP01000056
16.4 KB
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whole genome shotgun sequence
NZ_ACAP01000057
11.9 KB
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whole genome shotgun sequence
NZ_ACAP01000058
34.6 KB
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whole genome shotgun sequence
NZ_ACAP01000059
28.3 KB
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whole genome shotgun sequence
NZ_ACAP01000060
27.2 KB
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whole genome shotgun sequence
NZ_ACAP01000061
3.0 KB
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whole genome shotgun sequence
NZ_ACAP01000062
12.4 KB
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whole genome shotgun sequence
NZ_ACAP01000063
47.7 KB
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whole genome shotgun sequence
NZ_ACAP01000064
24.9 KB
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whole genome shotgun sequence
NZ_ACAP01000065
55.1 KB
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whole genome shotgun sequence
NZ_ACAP01000066
11.7 KB
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whole genome shotgun sequence
NZ_ACAP01000067
20.6 KB
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whole genome shotgun sequence
NZ_ACAP01000068
7.1 KB
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whole genome shotgun sequence
NZ_ACAP01000069
35.0 KB
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whole genome shotgun sequence
NZ_ACAP01000070
28.0 KB
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whole genome shotgun sequence
NZ_ACAP01000071
30.1 KB
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whole genome shotgun sequence
NZ_ACAP01000072
59.5 KB
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whole genome shotgun sequence
NZ_ACAP01000073
26.7 KB
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whole genome shotgun sequence
NZ_ACAP01000074
41.6 KB
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whole genome shotgun sequence
NZ_ACAP01000075
5.6 KB
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whole genome shotgun sequence
NZ_ACAP01000076
19.4 KB
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whole genome shotgun sequence
NZ_ACAP01000077
85.2 KB
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whole genome shotgun sequence
NZ_ACAP01000078
53.5 KB
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whole genome shotgun sequence
NZ_ACAP01000079
7.4 KB
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whole genome shotgun sequence
NZ_ACAP01000080
61.4 KB
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whole genome shotgun sequence
NZ_ACAP01000081
21.1 KB
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whole genome shotgun sequence
NZ_ACAP01000082
177.9 KB
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whole genome shotgun sequence
NZ_ACAP01000083
45.1 KB
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whole genome shotgun sequence
NZ_ACAP01000084
19.1 KB
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whole genome shotgun sequence
NZ_ACAP01000085
82.1 KB
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whole genome shotgun sequence
NZ_ACAP01000086
3.8 KB
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whole genome shotgun sequence
NZ_ACAP01000087
8.3 KB
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whole genome shotgun sequence
NZ_ACAP01000088
22.1 KB
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whole genome shotgun sequence
NZ_ACAP01000089
121.1 KB
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whole genome shotgun sequence
NZ_ACAP01000090
16.5 KB
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whole genome shotgun sequence
NZ_ACAP01000091
13.1 KB
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whole genome shotgun sequence
NZ_ACAP01000092
110.9 KB
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whole genome shotgun sequence
NZ_ACAP01000093
8.6 KB
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whole genome shotgun sequence
NZ_ACAP01000094
93.4 KB
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whole genome shotgun sequence
NZ_ACAP01000095
45.3 KB
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whole genome shotgun sequence
NZ_ACAP01000096
17.1 KB
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whole genome shotgun sequence
NZ_ACAP01000097
6.8 KB
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whole genome shotgun sequence
NZ_ACAP01000098
7.3 KB
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whole genome shotgun sequence
NZ_ACAP01000099
144.8 KB
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whole genome shotgun sequence
NZ_ACAP01000100
4.6 KB
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whole genome shotgun sequence
NZ_ACAP01000101
1.5 KB
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whole genome shotgun sequence
NZ_ACAP01000102
14.7 KB
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whole genome shotgun sequence
NZ_ACAP01000103
2.4 KB
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whole genome shotgun sequence
NZ_ACAP01000104
4.6 KB
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whole genome shotgun sequence
NZ_ACAP01000105
29.9 KB
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whole genome shotgun sequence
NZ_ACAP01000106
3.8 KB
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whole genome shotgun sequence
NZ_ACAP01000107
2.9 KB
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whole genome shotgun sequence
NZ_ACAP01000108
2.4 KB
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whole genome shotgun sequence
NZ_ACAP01000109
2.8 KB
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whole genome shotgun sequence
NZ_ACAP01000110
37.8 KB
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whole genome shotgun sequence
NZ_ACAP01000111
14.8 KB
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whole genome shotgun sequence
NZ_ACAP01000112
3.9 KB
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Taxonomy

External Links

Enterococcus faecalis JH1

Search Genome

Sequences

PubMed Search for Enterococcus faecalis JH1

Related Genomes