Eremococcus coleocola ACS-139-V-Col8

J. Craig Venter Institute

Genome Size: 1.8 megabases, Released Date: Nov. 24, 2010 #20297

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00015, whole genome shotgun sequence
NZ_AENN01000001
232.3 KB
436 CDS

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contig00027, whole genome shotgun sequence
NZ_AENN01000002
10.2 KB
20 CDS

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contig00009, whole genome shotgun sequence
NZ_AENN01000003
18.1 KB
34 CDS

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contig00021, whole genome shotgun sequence
NZ_AENN01000004
17.2 KB
32 CDS

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contig00002, whole genome shotgun sequence
NZ_AENN01000005
60.2 KB
114 CDS

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contig00001, whole genome shotgun sequence
NZ_AENN01000006
220.2 KB
470 CDS

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contig00024, whole genome shotgun sequence
NZ_AENN01000007
3.1 KB
6 CDS

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contig00020, whole genome shotgun sequence
NZ_AENN01000008
1.7 KB
0 CDS

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contig00017, whole genome shotgun sequence
NZ_AENN01000009
35.7 KB
54 CDS

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contig00008, whole genome shotgun sequence
NZ_AENN01000010
27.7 KB
44 CDS

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contig00004, whole genome shotgun sequence
NZ_AENN01000011
60.5 KB
134 CDS

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contig00011, whole genome shotgun sequence
NZ_AENN01000012
40.8 KB
76 CDS

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contig00016, whole genome shotgun sequence
NZ_AENN01000013
19.7 KB
44 CDS

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contig00026, whole genome shotgun sequence
NZ_AENN01000014
1.5 KB
4 CDS

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contig00018, whole genome shotgun sequence
NZ_AENN01000015
490.7 KB
956 CDS

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contig00019, whole genome shotgun sequence
NZ_AENN01000016
102.1 KB
210 CDS

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contig00010, whole genome shotgun sequence
NZ_AENN01000017
244.1 KB
538 CDS

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contig00005, whole genome shotgun sequence
NZ_AENN01000018
95.6 KB
188 CDS

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contig00025, whole genome shotgun sequence
NZ_AENN01000019
3.2 KB
0 CDS

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contig00014, whole genome shotgun sequence
NZ_AENN01000020
47.2 KB
80 CDS

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contig00006, whole genome shotgun sequence
NZ_AENN01000021
504 bytes
0 CDS

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Taxonomy

External Links

Eremococcus coleocola ACS-139-V-Col8

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Sequences

PubMed Search for Eremococcus coleocola ACS-139-V-Col8

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