Erwinia amylovora CFBP1430

Bielefeld Univ

Genome Size: 3.828 megabases, GC Content: 53.6%, Released Date: March 25, 2010 #19865

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
FN434113
3.6 MB
3706 CDS

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plasmid pEA29
FN434114
27.6 KB
29 CDS

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References

Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp
Smits,T.H., Rezzonico,F., Kamber,T., Blom,J., Goesmann,A., Frey,J.E. and Duffy,B. Mol. Plant Microbe Interact. 23 (4), 384-393 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Erwinia amylovora CFBP1430

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Sequences

References

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