Erwinia sp. Ejp617

Kangwon National University , NICEM(National Instrumentation Center for Environmental Management)

Genome Size: 3.9486 megabases, Released Date: Oct. 29, 2010 #19869

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002124
3.7 MB
3600 CDS

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plasmid pJE01
CP002125
30.1 KB
34 CDS

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plasmid pJE02
CP002126
5.2 KB
6 CDS

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plasmid pJE03
CP002127
6.3 KB
17 CDS

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plasmid pJE04
CP002128
3.2 KB
9 CDS

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plasmid pJE05
CP002129
2.6 KB
6 CDS

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References

Complete Genome Sequence of Japanese Erwinia Strain Ejp617, a Bacterial Shoot Blight Pathogen of Pear
Park,D.H., Thapa,S.P., Choi,B.S., Kim,W.S., Hur,J.H., Cho,J.M., Lim,J.S., Choi,I.Y. and Lim,C.K. J. Bacteriol. 193 (2), 586-587 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Erwinia sp. Ejp617

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Sequences

References

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