Escherichia coli 101-1

TIGR

GC Content: 50.6%, Released Date: Dec. 12, 2005 #18061

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAMK02000001
444.3 KB
402 CDS

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whole genome shotgun sequence
NZ_AAMK02000002
440.9 KB
411 CDS

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whole genome shotgun sequence
NZ_AAMK02000003
306.9 KB
283 CDS

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whole genome shotgun sequence
NZ_AAMK02000004
273.7 KB
265 CDS

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whole genome shotgun sequence
NZ_AAMK02000005
225.7 KB
232 CDS

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whole genome shotgun sequence
NZ_AAMK02000006
204.9 KB
193 CDS

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whole genome shotgun sequence
NZ_AAMK02000007
200.2 KB
192 CDS

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whole genome shotgun sequence
NZ_AAMK02000008
189.6 KB
169 CDS

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whole genome shotgun sequence
NZ_AAMK02000009
150.2 KB
139 CDS

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whole genome shotgun sequence
NZ_AAMK02000010
149.9 KB
134 CDS

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whole genome shotgun sequence
NZ_AAMK02000011
135.7 KB
149 CDS

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whole genome shotgun sequence
NZ_AAMK02000012
124.5 KB
121 CDS

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whole genome shotgun sequence
NZ_AAMK02000013
108.9 KB
104 CDS

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whole genome shotgun sequence
NZ_AAMK02000014
108.6 KB
107 CDS

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whole genome shotgun sequence
NZ_AAMK02000015
106.7 KB
105 CDS

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whole genome shotgun sequence
NZ_AAMK02000016
104.3 KB
99 CDS

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whole genome shotgun sequence
NZ_AAMK02000017
89.0 KB
71 CDS

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whole genome shotgun sequence
NZ_AAMK02000018
87.7 KB
87 CDS

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whole genome shotgun sequence
NZ_AAMK02000019
83.8 KB
89 CDS

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whole genome shotgun sequence
NZ_AAMK02000020
79.5 KB
82 CDS

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whole genome shotgun sequence
NZ_AAMK02000021
74.9 KB
78 CDS

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whole genome shotgun sequence
NZ_AAMK02000022
63.9 KB
60 CDS

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whole genome shotgun sequence
NZ_AAMK02000023
60.7 KB
61 CDS

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whole genome shotgun sequence
NZ_AAMK02000024
59.9 KB
48 CDS

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whole genome shotgun sequence
NZ_AAMK02000025
56.8 KB
53 CDS

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whole genome shotgun sequence
NZ_AAMK02000026
51.4 KB
65 CDS

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whole genome shotgun sequence
NZ_AAMK02000027
45.6 KB
36 CDS

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whole genome shotgun sequence
NZ_AAMK02000028
43.7 KB
45 CDS

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whole genome shotgun sequence
NZ_AAMK02000029
41.8 KB
43 CDS

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whole genome shotgun sequence
NZ_AAMK02000030
41.6 KB
42 CDS

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whole genome shotgun sequence
NZ_AAMK02000031
40.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AAMK02000032
39.5 KB
40 CDS

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whole genome shotgun sequence
NZ_AAMK02000033
38.4 KB
32 CDS

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whole genome shotgun sequence
NZ_AAMK02000034
34.9 KB
28 CDS

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whole genome shotgun sequence
NZ_AAMK02000035
33.8 KB
36 CDS

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whole genome shotgun sequence
NZ_AAMK02000036
31.4 KB
29 CDS

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whole genome shotgun sequence
NZ_AAMK02000037
28.7 KB
24 CDS

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whole genome shotgun sequence
NZ_AAMK02000038
28.4 KB
23 CDS

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whole genome shotgun sequence
NZ_AAMK02000039
28.0 KB
33 CDS

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whole genome shotgun sequence
NZ_AAMK02000040
26.5 KB
18 CDS

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whole genome shotgun sequence
NZ_AAMK02000041
25.6 KB
23 CDS

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whole genome shotgun sequence
NZ_AAMK02000042
22.7 KB
23 CDS

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whole genome shotgun sequence
NZ_AAMK02000043
22.6 KB
26 CDS

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whole genome shotgun sequence
NZ_AAMK02000044
22.4 KB
18 CDS

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whole genome shotgun sequence
NZ_AAMK02000045
21.4 KB
21 CDS

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whole genome shotgun sequence
NZ_AAMK02000046
20.5 KB
33 CDS

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whole genome shotgun sequence
NZ_AAMK02000047
20.5 KB
13 CDS

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whole genome shotgun sequence
NZ_AAMK02000048
18.6 KB
25 CDS

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whole genome shotgun sequence
NZ_AAMK02000049
17.9 KB
15 CDS

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whole genome shotgun sequence
NZ_AAMK02000050
14.8 KB
20 CDS

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whole genome shotgun sequence
NZ_AAMK02000051
13.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMK02000052
13.6 KB
11 CDS

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whole genome shotgun sequence
NZ_AAMK02000053
13.5 KB
6 CDS

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whole genome shotgun sequence
NZ_AAMK02000054
12.4 KB
10 CDS

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whole genome shotgun sequence
NZ_AAMK02000055
11.7 KB
10 CDS

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whole genome shotgun sequence
NZ_AAMK02000056
11.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AAMK02000057
9.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AAMK02000058
6.8 KB
6 CDS

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whole genome shotgun sequence
NZ_AAMK02000059
6.2 KB
8 CDS

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whole genome shotgun sequence
NZ_AAMK02000060
5.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMK02000061
4.3 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMK02000062
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMK02000063
4.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAMK02000064
3.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000065
3.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMK02000066
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAMK02000067
2.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMK02000068
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMK02000069
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000070
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMK02000071
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAMK02000072
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMK02000073
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000074
2.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000075
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000076
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000077
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000078
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000079
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000080
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMK02000081
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000082
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000083
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000084
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000085
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000086
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMK02000087
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000088
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000089
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000090
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAMK02000091
1014 bytes
0 CDS

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Taxonomy

External Links

Escherichia coli 101-1

Search Genome

Sequences

PubMed Search for Escherichia coli 101-1

Related Genomes