Escherichia coli 536

University of Goettingen

Genome Size: 4.9 megabases, GC Content: 50.5%, Released Date: July 13, 2006 #16978

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_008253
4.7 MB
4619 CDS

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References

Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536
Hochhut,B., Wilde,C., Balling,G., Middendorf,B., Dobrindt,U., Brzuszkiewicz,E., Gottschalk,G., Carniel,E. and Hacker,J. Mol. Microbiol. 61 (3), 584-595 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli 536

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Sequences

References

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