Escherichia coli ABU 83972

Georg-August-University Goettingen , Goettingen Genomics Laboratory

Genome Size: 5.1016 megabases, Released Date: Sept. 22, 2010 #19871

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001671
4.9 MB
4793 CDS

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plasmid pABU
CP001833
1.5 KB
3 CDS

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Circular View
Artemis Viewer

References

Host imprints on bacterial genomes--rapid, divergent evolution in individual patients
Zdziarski,J., Brzuszkiewicz,E., Wullt,B., Liesegang,H., Biran,D., Voigt,B., Gronberg-Hernandez,J., Ragnarsdottir,B., Hecker,M., Ron,E.Z., Daniel,R., Gottschalk,G., Hacker,J., Svanborg,C. and Dobrindt,U. PLoS Pathog. 6 (8), e1001078 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli ABU 83972

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Sequences

References

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