Escherichia coli B str. REL606

International E. coli B Consortium , GENOSCOPE / National DNA Sequencing Centre , KRIBB

Genome Size: 4.6 megabases, GC Content: 47.8%, Released Date: July 15, 2009 #16982

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012967
4.4 MB
4205 CDS

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References

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)
Jeong,H., Barbe,V., Lee,C.H., Vallenet,D., Yu,D.S., Choi,S.H., Couloux,A., Lee,S.W., Yoon,S.H., Cattolico,L., Hur,C.G., Park,H.S., Segurens,B., Kim,S.C., Oh,T.K., Lenski,R.E., Studier,F.W., Daegelen,P. and Kim,J.F. J. Mol. Biol. 394 (4), 644-652 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli B str. REL606

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Sequences

References

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