Escherichia coli E22

TIGR

Genome Size: 5.0 megabases, GC Content: 50.6%, Released Date: Sept. 7, 2005 #18067

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAJV02000001
293.0 KB
277 CDS

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whole genome shotgun sequence
NZ_AAJV02000002
286.1 KB
291 CDS

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whole genome shotgun sequence
NZ_AAJV02000003
281.8 KB
261 CDS

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whole genome shotgun sequence
NZ_AAJV02000004
267.1 KB
281 CDS

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whole genome shotgun sequence
NZ_AAJV02000005
214.6 KB
196 CDS

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whole genome shotgun sequence
NZ_AAJV02000006
195.7 KB
186 CDS

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whole genome shotgun sequence
NZ_AAJV02000007
183.0 KB
163 CDS

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whole genome shotgun sequence
NZ_AAJV02000008
161.6 KB
159 CDS

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whole genome shotgun sequence
NZ_AAJV02000009
154.1 KB
146 CDS

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whole genome shotgun sequence
NZ_AAJV02000010
152.6 KB
142 CDS

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whole genome shotgun sequence
NZ_AAJV02000011
138.0 KB
128 CDS

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whole genome shotgun sequence
NZ_AAJV02000012
130.4 KB
120 CDS

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whole genome shotgun sequence
NZ_AAJV02000013
126.3 KB
108 CDS

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whole genome shotgun sequence
NZ_AAJV02000014
110.8 KB
96 CDS

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whole genome shotgun sequence
NZ_AAJV02000015
107.6 KB
83 CDS

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whole genome shotgun sequence
NZ_AAJV02000016
105.5 KB
101 CDS

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whole genome shotgun sequence
NZ_AAJV02000017
102.6 KB
97 CDS

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whole genome shotgun sequence
NZ_AAJV02000018
102.2 KB
111 CDS

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whole genome shotgun sequence
NZ_AAJV02000019
101.2 KB
82 CDS

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whole genome shotgun sequence
NZ_AAJV02000020
97.4 KB
90 CDS

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whole genome shotgun sequence
NZ_AAJV02000021
96.3 KB
106 CDS

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whole genome shotgun sequence
NZ_AAJV02000022
95.4 KB
90 CDS

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whole genome shotgun sequence
NZ_AAJV02000023
94.4 KB
98 CDS

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whole genome shotgun sequence
NZ_AAJV02000024
83.8 KB
66 CDS

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whole genome shotgun sequence
NZ_AAJV02000025
82.2 KB
89 CDS

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whole genome shotgun sequence
NZ_AAJV02000026
77.3 KB
89 CDS

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whole genome shotgun sequence
NZ_AAJV02000027
62.9 KB
62 CDS

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whole genome shotgun sequence
NZ_AAJV02000028
60.8 KB
50 CDS

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whole genome shotgun sequence
NZ_AAJV02000029
60.8 KB
70 CDS

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whole genome shotgun sequence
NZ_AAJV02000030
57.9 KB
44 CDS

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whole genome shotgun sequence
NZ_AAJV02000031
57.5 KB
58 CDS

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whole genome shotgun sequence
NZ_AAJV02000032
56.9 KB
52 CDS

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whole genome shotgun sequence
NZ_AAJV02000033
55.2 KB
52 CDS

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whole genome shotgun sequence
NZ_AAJV02000034
54.8 KB
44 CDS

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whole genome shotgun sequence
NZ_AAJV02000035
52.5 KB
51 CDS

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whole genome shotgun sequence
NZ_AAJV02000036
45.8 KB
46 CDS

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whole genome shotgun sequence
NZ_AAJV02000037
45.4 KB
38 CDS

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whole genome shotgun sequence
NZ_AAJV02000038
45.0 KB
43 CDS

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whole genome shotgun sequence
NZ_AAJV02000039
43.3 KB
45 CDS

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whole genome shotgun sequence
NZ_AAJV02000040
43.0 KB
44 CDS

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whole genome shotgun sequence
NZ_AAJV02000041
42.3 KB
40 CDS

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whole genome shotgun sequence
NZ_AAJV02000042
40.8 KB
33 CDS

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whole genome shotgun sequence
NZ_AAJV02000043
38.8 KB
30 CDS

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whole genome shotgun sequence
NZ_AAJV02000044
36.0 KB
53 CDS

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whole genome shotgun sequence
NZ_AAJV02000045
35.2 KB
32 CDS

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whole genome shotgun sequence
NZ_AAJV02000046
33.7 KB
42 CDS

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whole genome shotgun sequence
NZ_AAJV02000047
31.6 KB
33 CDS

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whole genome shotgun sequence
NZ_AAJV02000048
31.2 KB
30 CDS

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whole genome shotgun sequence
NZ_AAJV02000049
29.3 KB
27 CDS

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whole genome shotgun sequence
NZ_AAJV02000050
29.0 KB
34 CDS

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whole genome shotgun sequence
NZ_AAJV02000051
28.6 KB
25 CDS

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whole genome shotgun sequence
NZ_AAJV02000052
25.6 KB
26 CDS

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whole genome shotgun sequence
NZ_AAJV02000053
20.3 KB
14 CDS

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whole genome shotgun sequence
NZ_AAJV02000054
19.6 KB
32 CDS

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whole genome shotgun sequence
NZ_AAJV02000055
18.9 KB
25 CDS

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whole genome shotgun sequence
NZ_AAJV02000056
18.9 KB
16 CDS

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whole genome shotgun sequence
NZ_AAJV02000057
17.9 KB
13 CDS

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whole genome shotgun sequence
NZ_AAJV02000058
16.9 KB
15 CDS

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whole genome shotgun sequence
NZ_AAJV02000059
16.9 KB
18 CDS

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whole genome shotgun sequence
NZ_AAJV02000060
14.9 KB
8 CDS

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whole genome shotgun sequence
NZ_AAJV02000061
14.7 KB
17 CDS

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whole genome shotgun sequence
NZ_AAJV02000062
14.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AAJV02000063
14.1 KB
12 CDS

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whole genome shotgun sequence
NZ_AAJV02000064
13.8 KB
7 CDS

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whole genome shotgun sequence
NZ_AAJV02000065
12.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AAJV02000066
12.4 KB
8 CDS

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whole genome shotgun sequence
NZ_AAJV02000067
11.3 KB
15 CDS

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whole genome shotgun sequence
NZ_AAJV02000068
11.0 KB
14 CDS

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whole genome shotgun sequence
NZ_AAJV02000069
9.6 KB
10 CDS

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whole genome shotgun sequence
NZ_AAJV02000070
8.9 KB
9 CDS

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whole genome shotgun sequence
NZ_AAJV02000071
8.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AAJV02000072
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_AAJV02000073
7.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAJV02000074
6.2 KB
5 CDS

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whole genome shotgun sequence
NZ_AAJV02000075
5.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AAJV02000076
5.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJV02000077
4.9 KB
6 CDS

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whole genome shotgun sequence
NZ_AAJV02000078
4.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000079
4.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJV02000080
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000081
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000082
3.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000083
3.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000084
3.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000085
2.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000086
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAJV02000087
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000088
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000089
2.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000090
2.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000091
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000092
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJV02000093
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJV02000094
2.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000095
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000096
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000097
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000098
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000099
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000100
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000101
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000102
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000103
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000104
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000105
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000106
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000107
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000108
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000109
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000110
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000111
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000112
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000113
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000114
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000115
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000116
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000117
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJV02000118
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJV02000119
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000120
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000121
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000122
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000123
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000124
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000125
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000126
1022 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAJV02000127
1005 bytes
0 CDS

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Taxonomy

External Links

Escherichia coli E22

Search Genome

Sequences

PubMed Search for Escherichia coli E22

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