Escherichia coli F11

TIGR

GC Content: 50.5%, Released Date: Sept. 7, 2005 #18068

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAJU02000001
454.5 KB
386 CDS

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whole genome shotgun sequence
NZ_AAJU02000002
336.4 KB
320 CDS

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whole genome shotgun sequence
NZ_AAJU02000003
282.5 KB
262 CDS

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whole genome shotgun sequence
NZ_AAJU02000004
247.8 KB
228 CDS

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whole genome shotgun sequence
NZ_AAJU02000005
232.0 KB
202 CDS

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whole genome shotgun sequence
NZ_AAJU02000006
169.9 KB
162 CDS

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whole genome shotgun sequence
NZ_AAJU02000007
149.8 KB
143 CDS

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whole genome shotgun sequence
NZ_AAJU02000008
147.0 KB
152 CDS

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whole genome shotgun sequence
NZ_AAJU02000009
144.0 KB
141 CDS

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whole genome shotgun sequence
NZ_AAJU02000010
140.1 KB
127 CDS

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whole genome shotgun sequence
NZ_AAJU02000011
125.3 KB
109 CDS

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whole genome shotgun sequence
NZ_AAJU02000012
113.1 KB
106 CDS

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whole genome shotgun sequence
NZ_AAJU02000013
110.2 KB
103 CDS

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whole genome shotgun sequence
NZ_AAJU02000014
103.5 KB
110 CDS

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whole genome shotgun sequence
NZ_AAJU02000015
101.8 KB
104 CDS

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whole genome shotgun sequence
NZ_AAJU02000016
100.2 KB
89 CDS

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whole genome shotgun sequence
NZ_AAJU02000017
93.7 KB
78 CDS

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whole genome shotgun sequence
NZ_AAJU02000018
79.7 KB
74 CDS

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whole genome shotgun sequence
NZ_AAJU02000019
77.0 KB
68 CDS

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whole genome shotgun sequence
NZ_AAJU02000020
75.4 KB
72 CDS

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whole genome shotgun sequence
NZ_AAJU02000021
74.4 KB
79 CDS

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whole genome shotgun sequence
NZ_AAJU02000022
73.8 KB
85 CDS

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whole genome shotgun sequence
NZ_AAJU02000023
72.9 KB
73 CDS

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whole genome shotgun sequence
NZ_AAJU02000024
71.5 KB
59 CDS

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whole genome shotgun sequence
NZ_AAJU02000025
70.8 KB
73 CDS

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whole genome shotgun sequence
NZ_AAJU02000026
70.1 KB
66 CDS

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whole genome shotgun sequence
NZ_AAJU02000027
67.5 KB
66 CDS

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whole genome shotgun sequence
NZ_AAJU02000028
67.3 KB
65 CDS

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whole genome shotgun sequence
NZ_AAJU02000029
61.0 KB
47 CDS

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whole genome shotgun sequence
NZ_AAJU02000030
59.5 KB
66 CDS

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whole genome shotgun sequence
NZ_AAJU02000031
59.4 KB
54 CDS

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whole genome shotgun sequence
NZ_AAJU02000032
59.3 KB
52 CDS

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whole genome shotgun sequence
NZ_AAJU02000033
58.1 KB
48 CDS

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whole genome shotgun sequence
NZ_AAJU02000034
57.1 KB
48 CDS

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whole genome shotgun sequence
NZ_AAJU02000035
50.5 KB
42 CDS

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whole genome shotgun sequence
NZ_AAJU02000036
47.7 KB
47 CDS

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whole genome shotgun sequence
NZ_AAJU02000037
45.4 KB
42 CDS

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whole genome shotgun sequence
NZ_AAJU02000038
44.2 KB
41 CDS

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whole genome shotgun sequence
NZ_AAJU02000039
43.0 KB
40 CDS

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whole genome shotgun sequence
NZ_AAJU02000040
39.0 KB
18 CDS

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whole genome shotgun sequence
NZ_AAJU02000041
34.7 KB
34 CDS

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whole genome shotgun sequence
NZ_AAJU02000042
33.7 KB
40 CDS

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whole genome shotgun sequence
NZ_AAJU02000043
32.5 KB
31 CDS

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whole genome shotgun sequence
NZ_AAJU02000044
32.5 KB
27 CDS

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whole genome shotgun sequence
NZ_AAJU02000045
30.6 KB
23 CDS

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whole genome shotgun sequence
NZ_AAJU02000046
27.4 KB
25 CDS

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whole genome shotgun sequence
NZ_AAJU02000047
27.4 KB
24 CDS

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whole genome shotgun sequence
NZ_AAJU02000048
26.7 KB
27 CDS

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whole genome shotgun sequence
NZ_AAJU02000049
26.5 KB
27 CDS

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whole genome shotgun sequence
NZ_AAJU02000050
25.0 KB
17 CDS

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whole genome shotgun sequence
NZ_AAJU02000051
20.7 KB
25 CDS

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whole genome shotgun sequence
NZ_AAJU02000052
20.5 KB
16 CDS

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whole genome shotgun sequence
NZ_AAJU02000053
20.3 KB
17 CDS

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whole genome shotgun sequence
NZ_AAJU02000054
19.3 KB
28 CDS

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whole genome shotgun sequence
NZ_AAJU02000055
19.2 KB
23 CDS

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whole genome shotgun sequence
NZ_AAJU02000056
17.3 KB
17 CDS

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whole genome shotgun sequence
NZ_AAJU02000057
16.5 KB
14 CDS

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whole genome shotgun sequence
NZ_AAJU02000058
15.4 KB
18 CDS

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whole genome shotgun sequence
NZ_AAJU02000059
15.3 KB
18 CDS

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whole genome shotgun sequence
NZ_AAJU02000060
14.7 KB
15 CDS

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whole genome shotgun sequence
NZ_AAJU02000061
12.5 KB
9 CDS

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whole genome shotgun sequence
NZ_AAJU02000062
9.7 KB
10 CDS

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whole genome shotgun sequence
NZ_AAJU02000063
5.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAJU02000064
5.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000065
5.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000066
4.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AAJU02000067
4.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000068
4.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000069
4.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000070
3.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000071
3.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000072
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000073
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000074
2.9 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000075
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000076
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000077
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000078
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000079
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAJU02000080
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000081
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000082
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000083
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000084
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000085
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000086
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000087
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000088
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000089
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000090
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAJU02000091
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000092
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000093
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000094
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000095
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000096
1.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AAJU02000097
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000098
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000099
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000100
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000101
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000102
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000103
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000104
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000105
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000106
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000107
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000108
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000109
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000110
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000111
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000112
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000113
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAJU02000114
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000115
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000116
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000117
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000118
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAJU02000119
1.0 KB
0 CDS

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Taxonomy

External Links

Escherichia coli F11

Search Genome

Sequences

PubMed Search for Escherichia coli F11

Related Genomes