Escherichia coli HS

TIGR

Genome Size: 4.6 megabases, GC Content: 50.8%, Released Date: Sept. 10, 2007 #16988

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_009800
4.4 MB
4378 CDS

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References

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
Rasko,D.A., Rosovitz,M.J., Myers,G.S., Mongodin,E.F., Fricke,W.F., Gajer,P., Crabtree,J., Sebaihia,M., Thomson,N.R., Chaudhuri,R., Henderson,I.R., Sperandio,V. and Ravel,J. J. Bacteriol. 190 (20), 6881-6893 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli HS

Search Genome

Sequences

References

Related Genomes