Escherichia coli O111:H- str. 11128

NCBI

Genome Size: 5.79 megabases, Released Date: Sept. 10, 2009 #16992

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_013364
5.1 MB
4972 CDS

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plasmid pO111_1
NC_013365
199.8 KB
222 CDS

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plasmid pO111_2
NC_013370
95.6 KB
121 CDS

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plasmid pO111_3
NC_013366
75.9 KB
72 CDS

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plasmid pO111_4
NC_013367
7.9 KB
10 CDS

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plasmid pO111_5
NC_013368
6.5 KB
10 CDS

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References

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K., Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M. and Hayashi,T. Proc. Natl. Acad. Sci. U.S.A. 106 (42), 17939-17944 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O111:H- str. 11128

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Sequences

References

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