Escherichia coli O127:H6 str. E2348/69

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Genome Size: 5.1 megabases, GC Content: 50.5%, Released Date: Nov. 26, 2008 #16993

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_011601
4.7 MB
4552 CDS

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plasmid pE2348-2
NC_011602
6.0 KB
9 CDS

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plasmid pMAR2
NC_011603
95.7 KB
90 CDS

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References

The complete genome sequence and comparative genome analysis of enteropathogenic E. coli O127:H6 strain E2348/69
Iguchi,A., Thomson,N.R., Ogura,Y., Saunders,D., Ooka,T., Henderson,I.R., Harris,D., Asadulghani,M., Kurokawa,K., Dean,P., Kenny,B., Quail,M.A., Thurston,S., Dougan,G., Hayashi,T., Parkhill,J. and Frankel,G. J. Bacteriol. (2008) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O127:H6 str. E2348/69

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Sequences

References

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