Escherichia coli O127:H6 str. E2348/69

View alignment of region with nucmer promer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve traM nucleotide sequence in FASTA format

Retrieve traM protein sequence in FASTA format

Retrieve E2348_P1_076 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using E2348_P1_076 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli Escherichia coli O127:H6 )

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