Escherichia coli O157:H7 str. EDL933

University of Wisconsin-Madison, USA

Genome Size: 5.59 megabases, GC Content: 50.3%, Released Date: Feb. 24, 2001 #16994

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

Escherichia coli O157:H7 EDL933, complete genome
NC_002655
5.3 MB
5298 CDS

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Escherichia coli O157:H7 EDL933 plasmid pO157
NC_007414
89.9 KB
99 CDS

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References

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
Perna,N.T., Plunkett,G. III, Burland,V., Mau,B., Glasner,J.D., Rose,D.J., Mayhew,G.F., Evans,P.S., Gregor,J., Kirkpatrick,H.A., Posfai,G., Hackett,J., Klink,S., Boutin,A., Shao,Y., Miller,L., Grotbeck,E.J., Davis,N.W., Lim,A., Dimalanta,E., Potamousis,K., Apodaca,J., Anantharaman,T.S., Lin,J., Yen,G., Schwartz,D.C., Welch,R.A. and Blattner,F.R. Nature 409 (6819), 529-533 (2001)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O157:H7 str. EDL933

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Sequences

References

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