Escherichia coli O157:H7 str. TW14359

University of Washington

Genome Size: 5.59 megabases, GC Content: 50.5%, Released Date: July 23, 2009 #16997

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_013008
5.3 MB
5255 CDS

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plasmid pO157
NC_013010
92.4 KB
110 CDS

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References

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence
Kulasekara,B.R., Jacobs,M., Zhou,Y., Wu,Z., Sims,E., Saenphimmachak,C., Rohmer,L., Ritchie,J.M., Radey,M., McKevitt,M., Freeman,T.L., Hayden,H., Haugen,E., Gillett,W., Fong,C., Chang,J., Beskhlebnaya,V., Waldor,M.K., Samadpour,M., Whittam,T.S., Kaul,R., Brittnacher,M. and Miller,S.I. Infect. Immun. 77 (9), 3713-3721 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O157:H7 str. TW14359

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Sequences

References

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