Escherichia coli O157:H7 str. TW14588

J. Craig Venter Institute

GC Content: 50.5%, Released Date: March 3, 2008 #18083

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABKY02000001
2.5 MB
2519 CDS

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whole genome shotgun sequence
NZ_ABKY02000002
1.2 MB
1333 CDS

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whole genome shotgun sequence
NZ_ABKY02000003
506.4 KB
605 CDS

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whole genome shotgun sequence
NZ_ABKY02000004
421.1 KB
473 CDS

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whole genome shotgun sequence
NZ_ABKY02000005
410.7 KB
433 CDS

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whole genome shotgun sequence
NZ_ABKY02000006
227.7 KB
236 CDS

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whole genome shotgun sequence
NZ_ABKY02000007
23.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ABKY02000008
21.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ABKY02000009
9.5 KB
18 CDS

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plasmid pTW14588, whole genome shotgun sequence
NZ_ABKY02000010
90.2 KB
115 CDS

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Taxonomy

External Links

Escherichia coli O157:H7 str. TW14588

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Sequences

PubMed Search for Escherichia coli O157:H7 str. TW14588

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