Escherichia coli O26:H11 str. 11368

University of Tokyo, Japan

Genome Size: 5.8578 megabases, GC Content: 50.6%, Released Date: Sept. 10, 2009 #19875

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_013361
5.4 MB
5364 CDS

Table view
Circular View
Artemis Viewer

plasmid pO26_1
NC_013369
83.2 KB
65 CDS

Table view
Circular View
Artemis Viewer

plasmid pO26_2
NC_013362
61.9 KB
81 CDS

Table view
Circular View
Artemis Viewer

plasmid pO26_3
NC_013363
5.6 KB
6 CDS

Table view
Circular View
Artemis Viewer

plasmid pO26_4
NC_014543
4.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

References

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K., Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M. and Hayashi,T. Proc. Natl. Acad. Sci. U.S.A. 106 (42), 17939-17944 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O26:H11 str. 11368

Search Genome

Sequences

References

Related Genomes