Escherichia coli O55:H7 str. CB9615

Nankai University , Tianjin Biochip

Genome Size: 5.466 megabases, GC Content: 50.5%, Released Date: March 8, 2010 #19876

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001846
5.1 MB
5014 CDS

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plasmid pO55
CP001847
64.5 KB
107 CDS

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Circular View
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References

Derivation of Escherichia coli O157:H7 from its O55:H7 precursor
Zhou,Z., Li,X., Liu,B., Beutin,L., Xu,J., Ren,Y., Feng,L., Lan,R., Reeves,P.R. and Wang,L. PLoS ONE 5 (1), E8700 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli O55:H7 str. CB9615

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Sequences

References

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