Escherichia coli RS218

Baylor College of Medicine HGSC , University of Wisconsin-Madison

Genome Size: 0.040207 megabases, GC Content: 46.9%, Released Date: June 4, 2007 #19878

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

Enterobacteria phage CUS-3, complete genome
CP000711
39.3 KB
62 CDS

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References

Escherichia coli K1-specific bacteriophage CUS-3 distribution and function in phase-variable capsular polysialic acid O acetylation
King,M.R., Vimr,R.P., Steenbergen,S.M., Spanjaard,L., Plunkett,G. III, Blattner,F.R. and Vimr,E.R. J. Bacteriol. 189 (17), 6447-6456 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli RS218

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Sequences

References

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