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Escherichia coli S88 plasmid pECOS88, complete sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS int YP_002401008.1 pECS88_0001 putative site-specific recombinase 132 872 1
CDS repA YP_002401009.1 pECS88_0002 RepFIB replication protein RepA 1157 2134 -1
CDS - YP_002401010.1 pECS88_0003 hypothetical protein 2543 2839 -1
CDS - YP_002401011.1 pECS88_0004 hypothetical protein 2808 3029 -1
CDS - YP_002401013.1 pECS88_0006 conserved hypothetical protein, putative fragment of ImpB UV protection protein 3494 3883 1
CDS - YP_002401014.1 pECS88_0007 transposase InsB (ORF2) IS1 4063 4566 -1
CDS - YP_002401015.1 pECS88_0008 transposase InsA (ORF1) IS1 4485 4709 -1
CDS iutA YP_002401016.1 pECS88_0009 Ferric aerobactin receptor precusor IutA 5285 7486 -1
CDS iucD YP_002401017.1 pECS88_0010 L-lysine 6-monooxigenase IucD 7568 8845 -1
CDS iucC YP_002401018.1 pECS88_0011 Aerobactin siderophore biosynthesis protein IucC 8842 10584 -1
CDS iucB YP_002401019.1 pECS88_0012 N(6)-hydroxylysine acetylase IucB 10584 11531 -1
CDS iucA YP_002401020.1 pECS88_0013 Aerobactin siderophore biosynthesis protein IucA 11532 13319 -1
CDS shiF YP_002401021.1 pECS88_0014 putative membrane transport protein ShiF 13392 14585 1
CDS - YP_002401022.1 pECS88_0015 putative membrane protein; CrcB-like protein 14965 15345 -1
CDS - YP_002401023.1 pECS88_0016 hypothetical protein 15417 15689 -1
CDS - YP_002401024.1 pECS88_0017 putative enolase 15686 16120 -1
CDS sitD YP_002401025.1 pECS88_0019 SitD protein, Iron transport protein, inner membrane component 16588 17445 -1
CDS sitC YP_002401026.1 pECS88_0020 SitC protein, iron transport protein, inner membrane component 17442 18299 -1
CDS sitB YP_002401027.1 pECS88_0021 SitB protein, iron transport protein, ATP-binding component 18296 19123 -1
CDS sitA YP_002401028.1 pECS88_0022 SitA protein, iron transport protein, periplasmic-binding protein 19123 20037 -1
CDS - YP_002401029.1 pECS88_0023 hypothetical protein 20160 20351 -1
CDS insA YP_002401030.1 pECS88_0024 IS1 repressor protein InsA 20393 20668 1
CDS - YP_002401031.1 pECS88_0026 hypothetical protein 21101 21775 -1
CDS - YP_002401032.1 pECS88_0027 hypothetical protein; putative exported protein 21933 22127 1
CDS - YP_002401033.1 pECS88_0028 hypothetical protein 22203 22682 -1
CDS - YP_002401034.1 pECS88_0029 hypothetical protein 22800 23249 1
CDS - YP_002401035.1 pECS88_0030 hypothetical protein 23866 25368 1
CDS - YP_002401036.1 pECS88_0031 hypothetical protein 25594 25785 1
CDS - YP_002401037.1 pECS88_0035 transposase InsA (ORF1) IS1 27444 27668 1
CDS insB YP_002401038.1 pECS88_0036 transposase 27587 28090 1
CDS sopA YP_002401039.1 pECS88_0037 plasmid-partitioning protein SopA 28381 29556 1
CDS sopB YP_002401040.1 pECS88_0038 plasmid-partitioning protein 29556 30527 1
CDS - YP_002401041.1 pECS88_0039 hypothetical protein 31055 31216 -1
CDS - YP_002401042.1 pECS88_0040 hypothetical protein 31244 31591 1
CDS - YP_002401043.1 pECS88_0041 hypothetical protein 31654 32235 1
CDS - YP_002401044.1 pECS88_0042 conserved hypothetical protein, putative transposase IS110 family 32721 33692 -1
CDS - YP_002401045.1 pECS88_0043 hypothetical protein 33844 34014 -1
CDS yubI YP_002401046.1 pECS88_0044 putative antirestriction protein 34073 34519 1
CDS - YP_002401047.1 pECS88_0045 hypothetical protein 34609 34980 1
CDS - YP_002401048.1 pECS88_0046 hypothetical protein 34980 35162 1
CDS ydbA YP_002401049.1 pECS88_0047 hypothetical protein 36438 37799 1
CDS ydcA YP_002401050.1 pECS88_0048 putative adenine-specific DNA methylase 37847 38410 1
CDS ssb YP_002401051.1 pECS88_0050 single-stranded DNA-binding protein 39216 39848 1
CDS yubL YP_002401052.1 pECS88_0051 hypothetical protein 39784 40044 1
CDS - YP_002401053.1 pECS88_0052 putative transposase ORF1, IS21 family 40381 41922 1
CDS - YP_002401054.1 pECS88_0053 Putative transposase ORF2, IS21 family 41934 42683 1
CDS ycjA YP_002401055.1 pECS88_0054 putative DNA-binding protein involved in plasmid partitioning (ParB-like partition protein) 42799 44652 1
CDS psiB YP_002401056.1 pECS88_0055 plasmid SOS inhibition protein B 44704 45141 1
CDS psiA YP_002401057.1 pECS88_0056 plasmid SOS inhibition protein A 45138 45857 1
CDS flmC YP_002401058.1 pECS88_0057 modulator of post-segregation killing protein 45991 46290 1
CDS yubN YP_002401059.1 pECS88_0059 conserved hypothetical protein YubN 46532 46849 -1
CDS yubO YP_002401060.1 pECS88_0060 hypothetical protein 47193 47480 1
CDS yubP YP_002401061.1 pECS88_0061 hypothetical protein 47518 48420 1
CDS yubQ YP_002401062.1 pECS88_0062 lytic transglycosylase 48716 49225 -1
CDS traM YP_002401063.1 pECS88_0063 conjugal transfer protein TraM 49640 50023 1
CDS traJ YP_002401064.1 pECS88_0064 conjugal transfer transcriptional regulator TraJ 50129 50899 1
CDS traY YP_002401065.1 pECS88_0065 conjugal transfer protein TraY 50992 51393 1
CDS traA YP_002401066.1 pECS88_0066 conjugal transfer pilin subunit TraA 51426 51791 1
CDS traL YP_002401067.1 pECS88_0067 conjugal transfer pilus assembly protein TraL 51806 52117 1
CDS traE YP_002401068.1 pECS88_0068 conjugal transfer pilus assembly protein TraE 52139 52705 1
CDS traK YP_002401069.1 pECS88_0069 conjugal transfer protein TraK 52692 53420 1
CDS traB YP_002401070.1 pECS88_0070 conjugal transfer pilus assembly protein TraB 53420 54847 1
CDS traP YP_002401071.1 pECS88_0071 conjugal transfer protein TraP 54837 55427 1
CDS trbD YP_002401072.1 pECS88_0072 conjugal transfer protein TrbD 55381 55611 1
CDS trbG YP_002401073.1 pECS88_0073 conjugal transfer protein TrbG 55623 55874 1
CDS traV YP_002401074.1 pECS88_0074 conjugal transfer protein TraV 55871 56386 1
CDS traR YP_002401075.1 pECS88_0075 conjugal transfer protein TraR 56521 56742 1
CDS traC YP_002401076.1 pECS88_0077 conjugal transfer ATP-binding protein TraC 56902 59529 1
CDS trbI YP_002401077.1 pECS88_0078 conjugal transfer protein TrbI 59526 59912 1
CDS traW YP_002401078.1 pECS88_0079 conjugal transfer pilus assembly protein TraW 59909 60541 1
CDS traU YP_002401079.1 pECS88_0080 conjugal transfer pilus assembly protein TraU 60538 61530 1
CDS trbC YP_002401080.1 pECS88_0081 conjugal transfer pilus assembly protein TrbC 61536 62177 1
CDS traN YP_002401081.1 pECS88_0082 conjugal transfer mating pair stabilization protein TraN 62174 63982 1
CDS trbE YP_002401082.1 pECS88_0083 conjugal transfer protein TrbE 64006 64266 1
CDS traF YP_002401083.1 pECS88_0084 conjugal pilus assembly protein TraF 64229 65002 1
CDS traQ YP_002401084.1 pECS88_0085 conjugal transfer pilin chaperone TraQ 65484 65768 1
CDS trbB YP_002401085.1 pECS88_0086 conjugal transfer protein TrbB 65755 66300 1
CDS trbJ YP_002401086.1 pECS88_0087 conjugal transfer protein TrbJ 66230 66592 1
CDS traH YP_002401087.1 pECS88_0088 conjugal transfer pilus assembly protein TraH 66589 67965 1
CDS traG YP_002401088.1 pECS88_0089 conjugal transfer mating pair stabilization protein TraG 67962 70472 1
CDS traS YP_002401089.1 pECS88_0091 surface exclusion inner membrane protein TraS 70791 71306 1
CDS traT YP_002401090.1 pECS88_0092 conjugal transfer surface exclusion protein TraT 71239 72069 1
CDS traD YP_002401091.1 pECS88_0093 conjugal transfer protein TraD 72321 74474 1
CDS traI YP_002401092.1 pECS88_0094 conjugal transfer nickase/helicase TraI 74474 79744 1
CDS traX YP_002401093.1 pECS88_0095 conjugal transfer pilus acetylation protein TraX 79764 80510 1
CDS finO YP_002401094.1 pECS88_0096 conjugal transfer fertility inhibition protein FinO 80514 81125 1
CDS yigA YP_002401095.1 pECS88_0097 conserved Hypothetical protein YigA 81263 81475 1
CDS yigB YP_002401096.1 pECS88_0098 putative nuclease YigB 81658 82119 1
CDS repA2 YP_002401097.1 pECS88_0099 replication protein 82164 82424 1
CDS repA1 YP_002401098.1 pECS88_0100 replication protein 82705 83574 1
CDS yacA YP_002401099.1 pECS88_0101 conserved hypothetical protein YacA, possible repressor 84490 84759 1
CDS yacB YP_002401100.1 pECS88_0102 putative plasmid stabilisation system protein YacB 84756 85037 1
CDS yacC YP_002401101.1 pECS88_0103 putative exoribonuclease YacC 85083 85931 1
CDS cia YP_002401102.1 pECS88_0104 Colicin-Ia 86117 87997 1
CDS imm YP_002401103.1 pECS88_0105 Colicin-Ia immunity protein 88019 88354 -1
CDS ybaA YP_002401104.1 pECS88_0106 conserved hypothetical protein YbaA 88483 88740 1
CDS ydeA YP_002401105.1 pECS88_0108 conserved hypothetical protein YdeA 88760 89350 -1
CDS ydfA YP_002401106.1 pECS88_0109 conserved hypothetical protein YdfA 89347 89607 -1
CDS - YP_002401107.1 pECS88_0110 Putative acetyltransferase 89900 90352 1
CDS - YP_002401108.1 pECS88_0111 conserved hypothetical protein, predicted dehydrogenase 90408 90674 -1

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