Escherichia coli SE11

Kitasato Univ.

Genome Size: 5.17 megabases, GC Content: 50.7%, Released Date: Oct. 22, 2008 #17000

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011415
4.7 MB
4679 CDS

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plasmid pSE11-1
NC_011419
97.7 KB
124 CDS

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plasmid pSE11-2
NC_011413
89.0 KB
112 CDS

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plasmid pSE11-3
NC_011416
59.1 KB
67 CDS

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plasmid pSE11-4
NC_011407
6.8 KB
10 CDS

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plasmid pSE11-5
NC_011408
5.2 KB
7 CDS

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plasmid pSE11-6
NC_011411
4.0 KB
3 CDS

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References

Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult
Oshima,K., Toh,H., Ogura,Y., Sasamoto,H., Morita,H., Park,S.H., Ooka,T., Iyoda,S., Taylor,T.D., Hayashi,T., Itoh,K. and Hattori,M. DNA Res. 15 (6), 375-386 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli SE11

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Sequences

References

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