Escherichia coli SE15

Kitasato Univ.

Genome Size: 4.82 megabases, Released Date: Dec. 14, 2009 #17660

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

DNA, complete genome
AP009378
4.5 MB
4338 CDS

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plasmid pECSF1 DNA, complete genome
AP009379
119.5 KB
150 CDS

Table view
Circular View
Artemis Viewer

References

Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2
Toh,H., Oshima,K., Toyoda,A., Ogura,Y., Ooka,T., Sasamoto,H., Park,S.H., Iyoda,S., Kurokawa,K., Morita,H., Itoh,K., Taylor,T.D., Hayashi,T. and Hattori,M. J. Bacteriol. 192 (4), 1165-1166 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli SE15

Search Genome

Sequences

References

Related Genomes