Escherichia coli SMS-3-5

TIGR

Genome Size: 5.25 megabases, GC Content: 50.5%, Released Date: March 20, 2008 #17001

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010498
4.8 MB
4743 CDS

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plasmid pSMS35_130
NC_010488
127.4 KB
153 CDS

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plasmid pSMS35_3
NC_010487
3.5 KB
3 CDS

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plasmid pSMS35_4
NC_010486
4.0 KB
4 CDS

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plasmid pSMS35_8
NC_010485
8.7 KB
10 CDS

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References

Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate E. coli SMS-3-5
Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J. and Stepanauskas,R. J. Bacteriol. (2008) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli SMS-3-5

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Sequences

References

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