Escherichia coli str. K-12 substr. DH10B

University of Wisconsin-Madison, USA

Genome Size: 4.7 megabases, GC Content: 50.8%, Released Date: March 14, 2008 #17004

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_010473
4.5 MB
4126 CDS

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References

The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse
Durfee,T., Nelson,R., Baldwin,S., Plunkett,G. III, Burland,V., Mau,B., Petrosino,J.F., Qin,X., Muzny,D.M., Ayele,M., Gibbs,R.A., Csorgo,B., Posfai,G., Weinstock,G.M. and Blattner,F.R. J. Bacteriol. 190 (7), 2597-2606 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli str. K-12 substr. DH10B

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Sequences

References

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