Escherichia coli str. K-12 substr. W3110

Nara Institute of Science and Technology

Genome Size: 4.6 megabases, GC Content: 50.8%, Released Date: Jan. 23, 2006 #17006

 Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Escherichia coli K-12: a cooperatively developed annotation snapshot--2005
  Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. Nucleic Acids Res. 34 (1), 1-9 (2006)
  PubMed, PubGet, HubMed
• Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
  Hayashi,K., Morooka,N., Yamamoto,Y., Fujita,K., Isono,K., Choi,S., Ohtsubo,E., Baba,T., Wanner,B.L., Mori,H. and Horiuchi,T. Mol. Syst. Biol. 2, 2006 (2006)
  PubMed, PubGet, HubMed
• Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features
  Yamamoto,Y., Aiba,H., Baba,T., Hayashi,K., Inada,T., Isono,K., Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y., Sivasundaram,S., Tagami,H., Takahashi,H., Takeda,J., Takemoto,K., Uehara,K., Wada,C., Yamagata,S. and Horiuchi,T. DNA Res. 4 (2), 91-113 (1997)
  PubMed, PubGet, HubMed
• A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map
  Itoh,T., Aiba,H., Baba,T., Hayashi,K., Inada,T., Isono,K., Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Wada,C., Yamamoto,Y. and Horiuchi,T. DNA Res. 3 (6), 379-392 (1996)
  PubMed, PubGet, HubMed
• A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map
  Aiba,H., Baba,T., Hayashi,K., Inada,T., Isono,K., Itoh,T., Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Takeuchi,Y., Wada,C., Yamamoto,Y. and Horiuchi,T. DNA Res. 3 (6), 363-377 (1996)
  PubMed, PubGet, HubMed
• The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption
  Arn,E.A. and Abelson,J.N. J. Biol. Chem. 271 (49), 31145-31153 (1996)
  PubMed, PubGet, HubMed
• A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map
  Oshima,T., Aiba,H., Baba,T., Fujita,K., Hayashi,K., Honjo,A., Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T., Mizobuchi,K., Mori,H., Motomura,K., Nakamura,Y., Nashimoto,H., Nishio,Y., Saito,N., Sampei,G., Seki,Y., Tagami,H., Takemoto,K., Wada,C., Yamamoto,Y., Yano,M. and Horiuchi,T. DNA Res. 3 (3), 137-155 (1996)
  PubMed, PubGet, HubMed
• Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region
  Fujita,N., Mori,H., Yura,T. and Ishihama,A. Nucleic Acids Res. 22 (9), 1637-1639 (1994)
  PubMed, PubGet, HubMed
• Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth
  Janosi,L., Shimizu,I. and Kaji,A. Proc. Natl. Acad. Sci. U.S.A. 91 (10), 4249-4253 (1994)
  PubMed, PubGet, HubMed
• Cloning and organization of the abc and mdl genes of Escherichia coli: relationship to eukaryotic multidrug resistance
  Allikmets,R., Gerrard,B., Court,D. and Dean,M. Gene 136 (1-2), 231-236 (1993)
  PubMed, PubGet, HubMed
• The genes of the glutamine synthetase adenylylation cascade are not regulated by nitrogen in Escherichia coli
  van Heeswijk,W.C., Rabenberg,M., Westerhoff,H.V. and Kahn,D. Mol. Microbiol. 9 (3), 443-457 (1993)
  PubMed, PubGet, HubMed
• Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories
  Zhao,S., Sandt,C.H., Feulner,G., Vlazny,D.A., Gray,J.A. and Hill,C.W. J. Bacteriol. 175 (10), 2799-2808 (1993)
  PubMed, PubGet, HubMed
• Characterization of the gcd gene from Escherichia coli K-12 W3110 and regulation of its expression
  Yamada,M., Asaoka,S., Saier,M.H. Jr. and Yamada,Y. J. Bacteriol. 175 (2), 568-571 (1993)
  PubMed, PubGet, HubMed
• Structural requirements for the processing of Escherichia coli 5 S ribosomal RNA by RNase E in vitro
  Cormack,R.S. and Mackie,G.A. J. Mol. Biol. 228 (4), 1078-1090 (1992)
  PubMed, PubGet, HubMed
• Identification, cloning, and characterization of rcsF, a new regulator gene for exopolysaccharide synthesis that suppresses the division mutation ftsZ84 in Escherichia coli K-12
  Gervais,F.G. and Drapeau,G.R. J. Bacteriol. 174 (24), 8016-8022 (1992)
  PubMed, PubGet, HubMed
• Identification and characterization of the smbA gene, a suppressor of the mukB null mutant of Escherichia coli
  Yamanaka,K., Ogura,T., Niki,H. and Hiraga,S. J. Bacteriol. 174 (23), 7517-7526 (1992)
  PubMed, PubGet, HubMed
• Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli
  Condon,C., Philips,J., Fu,Z.Y., Squires,C. and Squires,C.L. EMBO J. 11 (11), 4175-4185 (1992)
  PubMed, PubGet, HubMed
• The Crl protein activates cryptic genes for curli formation and fibronectin binding in Escherichia coli HB101
  Arnqvist,A., Olsen,A., Pfeifer,J., Russell,D.G. and Normark,S. Mol. Microbiol. 6 (17), 2443-2452 (1992)
  PubMed, PubGet, HubMed
• Cloning, sequence analysis, and overexpression of Escherichia coli folK, the gene coding for 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
  Talarico,T.L., Ray,P.H., Dev,I.K., Merrill,B.M. and Dallas,W.S. J. Bacteriol. 174 (18), 5971-5977 (1992)
  PubMed, PubGet, HubMed
• The genes encoding the two carboxyltransferase subunits of Escherichia coli acetyl-CoA carboxylase
  Li,S.J. and Cronan,J.E. Jr. J. Biol. Chem. 267 (24), 16841-16847 (1992)
  PubMed, PubGet, HubMed
• Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region
  Yura,T., Mori,H., Nagai,H., Nagata,T., Ishihama,A., Fujita,N., Isono,K., Mizobuchi,K. and Nakata,A. Nucleic Acids Res. 20 (13), 3305-3308 (1992)
  PubMed, PubGet, HubMed
• Nucleotide and deduced amino acid sequence of the recA gene of Vibrio cholerae
  Ghosh,S.K., Biswas,S.K., Paul,K. and Das,J. Nucleic Acids Res. 20 (2), 372 (1992)
  PubMed, PubGet, HubMed
• The nucleotide sequence of a voltage-gated chloride channel from the electric organ of Torpedo californica
  O'Neill,G.P., Grygorczyk,R., Adam,M. and Ford-Hutchinson,A.W. Biochim. Biophys. Acta 1129 (1), 131-134 (1991)
  PubMed, PubGet, HubMed
• Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase
  Kajie,S., Ideta,R., Yamato,I. and Anraku,Y. FEMS Microbiol. Lett. 67 (2), 205-211 (1991)
  PubMed, PubGet, HubMed
• Use of site-directed mutagenesis to enhance the epitope-shielding effect of covalent modification of proteins with polyethylene glycol
  Hershfield,M.S., Chaffee,S., Koro-Johnson,L., Mary,A., Smith,A.A. and Short,S.A. Proc. Natl. Acad. Sci. U.S.A. 88 (16), 7185-7189 (1991)
  PubMed, PubGet, HubMed
• Identification of the promoter region of the ribosome-releasing factor cistron (frr)
  Shimizu,I. and Kaji,A. J. Bacteriol. 173 (16), 5181-5187 (1991)
  PubMed, PubGet, HubMed
• The gef gene from Escherichia coli is regulated at the level of translation
  Poulsen,L.K., Refn,A., Molin,S. and Andersson,P. Mol. Microbiol. 5 (7), 1639-1648 (1991)
  PubMed, PubGet, HubMed
• Topographic analysis of the toxic Gef protein from Escherichia coli
  Poulsen,L.K., Refn,A., Molin,S. and Andersson,P. Mol. Microbiol. 5 (7), 1627-1637 (1991)
  PubMed, PubGet, HubMed
• Nucleotide sequence and characterization of the sfs1 gene: sfs1 is involved in CRP*-dependent mal gene expression in Escherichia coli
  Kawamukai,M., Utsumi,R., Takeda,K., Higashi,A., Matsuda,H., Choi,Y.L. and Komano,T. J. Bacteriol. 173 (8), 2644-2648 (1991)
  PubMed, PubGet, HubMed
• ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
  Hulton,C.S., Higgins,C.F. and Sharp,P.M. Mol. Microbiol. 5 (4), 825-834 (1991)
  PubMed, PubGet, HubMed
• The cloning and DNA sequence of the gene for the glutathione-regulated potassium-efflux system KefC of Escherichia coli
  Munro,A.W., Ritchie,G.Y., Lamb,A.J., Douglas,R.M. and Booth,I.R. Mol. Microbiol. 5 (3), 607-616 (1991)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the fixABC region of Azorhizobium caulinodans ORS571: similarity of the fixB product with eukaryotic flavoproteins, characterization of fixX, and identification of nifW
  Arigoni,F., Kaminski,P.A., Hennecke,H. and Elmerich,C. Mol. Gen. Genet. 225 (3), 514-520 (1991)
  PubMed, PubGet, HubMed
• Gene sequences and comparison of the fimbrial subunits representative of Bacteroides nodosus serotypes A to I: class I and class II strains
  Mattick,J.S., Anderson,B.J., Cox,P.T., Dalrymple,B.P., Bills,M.M., Hobbs,M. and Egerton,J.R. Mol. Microbiol. 5 (3), 561-573 (1991)
  PubMed, PubGet, HubMed
• Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
  Company,M., Arenas,J. and Abelson,J. Nature 349 (6309), 487-493 (1991)
  PubMed, PubGet, HubMed
• Four types of IS1 with differences in nucleotide sequence reside in the Escherichia coli K-12 chromosome
  Umeda,M. and Ohtsubo,E. Gene 98 (1), 1-5 (1991)
  PubMed, PubGet, HubMed
• The ompH gene of Yersinia enterocolitica: cloning, sequencing, expression, and comparison with known enterobacterial ompH sequences
  Hirvas,L., Koski,P. and Vaara,M. J. Bacteriol. 173 (3), 1223-1229 (1991)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the lsp-dapB interval in Escherichia coli
  Bouvier,J. and Stragier,P. Nucleic Acids Res. 19 (1), 180 (1991)
  PubMed, PubGet, HubMed
• Cloning and nucleotide sequence of the firA gene and the firA200(Ts) allele from Escherichia coli
  Dicker,I.B. and Seetharam,S. J. Bacteriol. 173 (1), 334-344 (1991)
  PubMed, PubGet, HubMed
• Structural genes of glutamate 1-semialdehyde aminotransferase for porphyrin synthesis in a cyanobacterium and Escherichia coli
  Grimm,B., Bull,A. and Breu,V. Mol. Gen. Genet. 225 (1), 1-10 (1991)
  PubMed, PubGet, HubMed
• Nucleotide sequence and functions of mrk determinants necessary for expression of type 3 fimbriae in Klebsiella pneumoniae
  Allen,B.L., Gerlach,G.F. and Clegg,S. J. Bacteriol. 173 (2), 916-920 (1991)
  PubMed, PubGet, HubMed
• Aphidicolin inhibits DNA polymerase II of Escherichia coli, an alpha-like DNA polymerase
  Chen,H., Lawrence,C.B., Bryan,S.K. and Moses,R.E. Nucleic Acids Res. 18 (23), 7185-7186 (1990)
  PubMed, PubGet, HubMed
• Cloning and sequencing of a bile acid-inducible operon from Eubacterium sp. strain VPI 12708
  Mallonee,D.H., White,W.B. and Hylemon,P.B. J. Bacteriol. 172 (12), 7011-7019 (1990)
  PubMed, PubGet, HubMed
• Nucleotide sequence of Rhizobium loti nodI
  Young,C., Collins-Emerson,J.M., Terzaghi,E.A. and Scott,D.B. Nucleic Acids Res. 18 (22), 6691 (1990)
  PubMed, PubGet, HubMed
• Nucleotide sequence and deletion analysis of the polB gene of Escherichia coli
  Chen,H., Sun,Y., Stark,T., Beattie,W. and Moses,R.E. DNA Cell Biol. 9 (9), 631-635 (1990)
  PubMed, PubGet, HubMed
• Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
  Eriani,G., Delarue,M., Poch,O., Gangloff,J. and Moras,D. Nature 347 (6289), 203-206 (1990)
  PubMed, PubGet, HubMed
• Nucleotide sequence of a gene, hpt, for hypoxanthine phosphoribosyltransferase from Vibrio harveyi
  Showalter,R.E. and Silverman,M.R. Nucleic Acids Res. 18 (15), 4621 (1990)
  PubMed, PubGet, HubMed
• Levanase operon of Bacillus subtilis includes a fructose-specific phosphotransferase system regulating the expression of the operon
  Martin-Verstraete,I., Debarbouille,M., Klier,A. and Rapoport,G. J. Mol. Biol. 214 (3), 657-671 (1990)
  PubMed, PubGet, HubMed
• Peptidase D gene (pepD) of Escherichia coli K-12: nucleotide sequence, transcript mapping, and comparison with other peptidase genes
  Henrich,B., Monnerjahn,U. and Plapp,R. J. Bacteriol. 172 (8), 4641-4651 (1990)
  PubMed, PubGet, HubMed
• Products of three accessory genes, pilB, pilC, and pilD, are required for biogenesis of Pseudomonas aeruginosa pili
  Nunn,D., Bergman,S. and Lory,S. J. Bacteriol. 172 (6), 2911-2919 (1990)
  PubMed, PubGet, HubMed
• The nucleotide sequence of leuC from Salmonella typhimurium
  Rosenthal,E.R. and Calvo,J.M. Nucleic Acids Res. 18 (10), 3072 (1990)
  PubMed, PubGet, HubMed
• Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation
  Kang,P.J. and Craig,E.A. J. Bacteriol. 172 (4), 2055-2064 (1990)
  PubMed, PubGet, HubMed
• Structure and regulation of the gene for dGTP triphosphohydrolase from Escherichia coli
  Wurgler,S.M. and Richardson,C.C. Proc. Natl. Acad. Sci. U.S.A. 87 (7), 2740-2744 (1990)
  PubMed, PubGet, HubMed
• Molecular analysis of the structural gene for yeast transaldolase
  Schaaff,I., Hohmann,S. and Zimmermann,F.K. Eur. J. Biochem. 188 (3), 597-603 (1990)
  PubMed, PubGet, HubMed
• The nucleotide sequence of leuA from Salmonella typhimurium
  Ricca,E. and Calvo,J.M. Nucleic Acids Res. 18 (5), 1290 (1990)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the aroP gene encoding the general aromatic amino acid transport protein of Escherichia coli K-12: homology with yeast transport proteins
  Honore,N. and Cole,S.T. Nucleic Acids Res. 18 (3), 653 (1990)
  PubMed, PubGet, HubMed
• Nucleotide sequences of the sfuA, sfuB, and sfuC genes of Serratia marcescens suggest a periplasmic-binding-protein-dependent iron transport mechanism
  Angerer,A., Gaisser,S. and Braun,V. J. Bacteriol. 172 (2), 572-578 (1990)
  PubMed, PubGet, HubMed
• Molecular characterization of the nodulation gene, nodT, from two biovars of Rhizobium leguminosarum
  Surin,B.P., Watson,J.M., Hamilton,W.D., Economou,A. and Downie,J.A. Mol. Microbiol. 4 (2), 245-252 (1990)
  PubMed, PubGet, HubMed
• Identification and sequence of the drpA gene from Escherichia coli
  Zhou,Z. and Syvanen,M. J. Bacteriol. 172 (1), 281-286 (1990)
  PubMed, PubGet, HubMed
• Characterization of a leuA gene and an ARS element from Mucor circinelloides
  Roncero,M.I., Jepsen,L.P., Stroman,P. and van Heeswijck,R. Gene 84 (2), 335-343 (1989)
  PubMed, PubGet, HubMed
• Molecular cloning and expression of ribosome releasing factor
  Ichikawa,S. and Kaji,A. J. Biol. Chem. 264 (33), 20054-20059 (1989)
  PubMed, PubGet, HubMed
• Molecular cloning and sequence analysis of the cDNA for rat mitochondrial enoyl-CoA hydratase. Structural and evolutionary relationships linked to the bifunctional enzyme of the peroxisomal beta-oxidation system
  Minami-Ishii,N., Taketani,S., Osumi,T. and Hashimoto,T. Eur. J. Biochem. 185 (1), 73-78 (1989)
  PubMed, PubGet, HubMed
• Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family
  Matsubara,Y., Indo,Y., Naito,E., Ozasa,H., Glassberg,R., Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K. J. Biol. Chem. 264 (27), 16321-16331 (1989)
  PubMed, PubGet, HubMed
• Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12
  Roa,B.B., Connolly,D.M. and Winkler,M.E. J. Bacteriol. 171 (9), 4767-4777 (1989)
  PubMed, PubGet, HubMed
• Signalling proteins in enterobacterial AmpC beta-lactamase regulation
  Lindquist,S., Galleni,M., Lindberg,F. and Normark,S. Mol. Microbiol. 3 (8), 1091-1102 (1989)
  PubMed, PubGet, HubMed
• Spermidine biosynthesis in Escherichia coli: promoter and termination regions of the speED operon
  Xie,Q.W., Tabor,C.W. and Tabor,H. J. Bacteriol. 171 (8), 4457-4465 (1989)
  PubMed, PubGet, HubMed
• IS421, a new insertion sequence in Escherichia coli
  Sato,S., Nakada,Y. and Shiratsuchi,A. FEBS Lett. 249 (1), 21-26 (1989)
  PubMed, PubGet, HubMed
• Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control
  Liu,J.D. and Parkinson,J.S. J. Bacteriol. 171 (3), 1254-1261 (1989)
  PubMed, PubGet, HubMed
• Accurate mapping of the Escherichia coli pepD gene by sequence analysis of its 5' flanking region
  Henrich,B., Schroeder,U., Frank,R.W. and Plapp,R. Mol. Gen. Genet. 215 (3), 369-373 (1989)
  PubMed, PubGet, HubMed
• Sequence analysis and regulation of the htrA gene of Escherichia coli: a sigma 32-independent mechanism of heat-inducible transcription
  Lipinska,B., Sharma,S. and Georgopoulos,C. Nucleic Acids Res. 16 (21), 10053-10067 (1988)
  PubMed, PubGet, HubMed
• Characterization of the cyn operon in Escherichia coli K12
  Sung,Y.C. and Fuchs,J.A. J. Biol. Chem. 263 (29), 14769-14775 (1988)
  PubMed, PubGet, HubMed
• Primary structures and catalytic properties of isoenzymes encoded by the two 4-coumarate: CoA ligase genes in parsley
  Lozoya,E., Hoffmann,H., Douglas,C., Schulz,W., Scheel,D. and Hahlbrock,K. Eur. J. Biochem. 176 (3), 661-667 (1988)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the gene encoding the GMP reductase of Escherichia coli K12
  Andrews,S.C. and Guest,J.R. Biochem. J. 255 (1), 35-43 (1988)
  PubMed, PubGet, HubMed
• Human dioxin-inducible cytosolic NAD(P)H:menadione oxidoreductase. cDNA sequence and localization of gene to chromosome 16
  Jaiswal,A.K., McBride,O.W., Adesnik,M. and Nebert,D.W. J. Biol. Chem. 263 (27), 13572-13578 (1988)
  PubMed, PubGet, HubMed
• Sequencing of the gene ant which affects the Na+/H+ antiporter activity in Escherichia coli
  Karpel,R., Olami,Y., Taglicht,D., Schuldiner,S. and Padan,E. J. Biol. Chem. 263 (21), 10408-10414 (1988)
  PubMed, PubGet, HubMed
• Nucleotide sequence and organization of copper resistance genes from Pseudomonas syringae pv. tomato
  Mellano,M.A. and Cooksey,D.A. J. Bacteriol. 170 (6), 2879-2883 (1988)
  PubMed, PubGet, HubMed
• First committed step of lipid A biosynthesis in Escherichia coli: sequence of the lpxA gene
  Coleman,J. and Raetz,C.R. J. Bacteriol. 170 (3), 1268-1274 (1988)
  PubMed, PubGet, HubMed
• Complementary DNA and derived amino acid sequence of the precursor of one of the three protein components of the inter-alpha-trypsin inhibitor complex
  Gebhard,W., Schreitmuller,T., Hochstrasser,K. and Wachter,E. FEBS Lett. 229 (1), 63-67 (1988)
  PubMed, PubGet, HubMed
• Sequence analysis of the Escherichia coli dnaE gene
  Tomasiewicz,H.G. and McHenry,C.S. J. Bacteriol. 169 (12), 5735-5744 (1987)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the Escherichia coli gene for lipid A disaccharide synthase
  Crowell,D.N., Reznikoff,W.S. and Raetz,C.R. J. Bacteriol. 169 (12), 5727-5734 (1987)
  PubMed, PubGet, HubMed
• The speEspeD operon of Escherichia coli. Formation and processing of a proenzyme form of S-adenosylmethionine decarboxylase
  Tabor,C.W. and Tabor,H. J. Biol. Chem. 262 (33), 16037-16040 (1987)
  PubMed, PubGet, HubMed
• The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons
  Nonet,M.L., Marvel,C.C. and Tolan,D.R. J. Biol. Chem. 262 (25), 12209-12217 (1987)
  PubMed, PubGet, HubMed
• fhuC and fhuD genes for iron (III)-ferrichrome transport into Escherichia coli K-12
  Coulton,J.W., Mason,P. and Allatt,D.D. J. Bacteriol. 169 (8), 3844-3849 (1987)
  PubMed, PubGet, HubMed
• A newly discovered tRNA(1Asp) gene (aspV) of Escherichia coli K12
  Horiuchi,T., Nagasawa,T., Takano,K. and Sekiguchi,M. Mol. Gen. Genet. 206 (2), 356-357 (1987)
  PubMed, PubGet, HubMed
• Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure
  Ben-Bassat,A., Bauer,K., Chang,S.Y., Myambo,K., Boosman,A. and Chang,S. J. Bacteriol. 169 (2), 751-757 (1987)
  PubMed, PubGet, HubMed
• Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame
  Gronger,P., Manian,S.S., Reilander,H., O'Connell,M., Priefer,U.B. and Puhler,A. Nucleic Acids Res. 15 (1), 31-49 (1987)
  PubMed, PubGet, HubMed
• DNA base changes and alkylation following in vivo exposure of Escherichia coli to N-methyl-N-nitrosourea or N-ethyl-N-nitrosourea
  Richardson,K.K., Richardson,F.C., Crosby,R.M., Swenberg,J.A. and Skopek,T.R. Proc. Natl. Acad. Sci. U.S.A. 84 (2), 344-348 (1987)
  PubMed, PubGet, HubMed
• Transcription control of the aroP gene in Escherichia coli K-12: analysis of operator mutants
  Chye,M.L. and Pittard,J. J. Bacteriol. 169 (1), 386-393 (1987)
  PubMed, PubGet, HubMed
• The gene for Escherichia coli diadenosine tetraphosphatase is located immediately clockwise to folA and forms an operon with ksgA
  Blanchin-Roland,S., Blanquet,S., Schmitter,J.M. and Fayat,G. Mol. Gen. Genet. 205 (3), 515-522 (1986)
  PubMed, PubGet, HubMed
• Structure and function of dnaQ and mutD mutators of Escherichia coli
  Takano,K., Nakabeppu,Y., Maki,H., Horiuchi,T. and Sekiguchi,M. Mol. Gen. Genet. 205 (1), 9-13 (1986)
  PubMed, PubGet, HubMed
• Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element
  Mackie,G.A. Nucleic Acids Res. 14 (17), 6965-6981 (1986)
  PubMed, PubGet, HubMed
• Iron hydroxamate transport of Escherichia coli: nucleotide sequence of the fhuB gene and identification of the protein
  Koster,W. and Braun,V. Mol. Gen. Genet. 204 (3), 435-442 (1986)
  PubMed, PubGet, HubMed
• Glutamyl-tRNA synthetase of Escherichia coli. Isolation and primary structure of the gltX gene and homology with other aminoacyl-tRNA synthetases
  Breton,R., Sanfacon,H., Papayannopoulos,I., Biemann,K. and Lapointe,J. J. Biol. Chem. 261 (23), 10610-10617 (1986)
  PubMed, PubGet, HubMed
• Cloning and characterization of a cDNA encoding the rat brain glucose-transporter protein
  Birnbaum,M.J., Haspel,H.C. and Rosen,O.M. Proc. Natl. Acad. Sci. U.S.A. 83 (16), 5784-5788 (1986)
  PubMed, PubGet, HubMed
• DNA sequence and coding properties of mutD(dnaQ) a dominant Escherichia coli mutator gene
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  PubMed, PubGet, HubMed
• Nucleotide sequence of the Escherichia coli dnaJ gene and purification of the gene product
  Ohki,M., Tamura,F., Nishimura,S. and Uchida,H. J. Biol. Chem. 261 (4), 1778-1781 (1986)
  PubMed, PubGet, HubMed
• Protein fusions of beta-galactosidase to the ferrichrome-iron receptor of Escherichia coli K-12
  Coulton,J.W., Mason,P., Cameron,D.R., Carmel,G., Jean,R. and Rode,H.N. J. Bacteriol. 165 (1), 181-192 (1986)
  PubMed, PubGet, HubMed
• The organization of the araBAD operon of Escherichia coli
  Lee,N., Gielow,W., Martin,R., Hamilton,E. and Fowler,A. Gene 47 (2-3), 231-244 (1986)
  PubMed, PubGet, HubMed
• Structural analysis of a new GC-specific insertion element IS186
  Chong,P., Hui,I., Loo,T. and Gillam,S. FEBS Lett. 192 (1), 47-52 (1985)
  PubMed, PubGet, HubMed
• Molecular cloning and sequencing of the gene for CDP-diglyceride synthetase of Escherichia coli
  Icho,T., Sparrow,C.P. and Raetz,C.R. J. Biol. Chem. 260 (22), 12078-12083 (1985)
  PubMed, PubGet, HubMed
• Transcriptional organization of the convergent overlapping dnaQ-rnh genes of Escherichia coli
  Nomura,T., Aiba,H. and Ishihama,A. J. Biol. Chem. 260 (11), 7122-7125 (1985)
  PubMed, PubGet, HubMed
• Characterization of the ileS-lsp operon in Escherichia coli. Identification of an open reading frame upstream of the ileS gene and potential promoter(s) for the ileS-lsp operon
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  PubMed, PubGet, HubMed
• Consensus sequence for Escherichia coli heat shock gene promoters
  Cowing,D.W., Bardwell,J.C., Craig,E.A., Woolford,C., Hendrix,R.W. and Gross,C.A. Proc. Natl. Acad. Sci. U.S.A. 82 (9), 2679-2683 (1985)
  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
• Repetitive extragenic palindromic (REP) sequences in the Escherichia coli gdhA gene
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
• Nucleotide sequence and expression of the Escherichia coli dapB gene
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  PubMed, PubGet, HubMed
• Regulation of expression and nucleotide sequence of the Escherichia coli dapD gene
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
• Analysis of the Escherichia coli proBA locus by DNA and protein sequencing
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  PubMed, PubGet, HubMed
• Multiple regulatory signals in the control region of the Escherichia coli carAB operon
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
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  PubMed, PubGet, HubMed
• The pyruvate dehydrogenase complex of Escherichia coli K12. Nucleotide sequence encoding the dihydrolipoamide acetyltransferase component
  Stephens,P.E., Darlison,M.G., Lewis,H.M. and Guest,J.R. Eur. J. Biochem. 133 (3), 481-489 (1983)
  PubMed, PubGet, HubMed
• The pyruvate dehydrogenase complex of Escherichia coli K12. Nucleotide sequence encoding the pyruvate dehydrogenase component
  Stephens,P.E., Darlison,M.G., Lewis,H.M. and Guest,J.R. Eur. J. Biochem. 133 (1), 155-162 (1983)
  PubMed, PubGet, HubMed
• Low levels of RNase H activity in Escherichia coli FB2 rnh result from a single-base change in the structural gene of RNase H
  Kanaya,S. and Crouch,R.J. J. Bacteriol. 154 (2), 1021-1026 (1983)
  PubMed, PubGet, HubMed
• Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12
  Overbeeke,N., Bergmans,H., van Mansfeld,F. and Lugtenberg,B. J. Mol. Biol. 163 (4), 513-532 (1983)
  PubMed, PubGet, HubMed
• Sequence of the malK gene in E.coli K12
  Gilson,E., Nikaido,H. and Hofnung,M. Nucleic Acids Res. 10 (22), 7449-7458 (1982)
  PubMed, PubGet, HubMed
• Is the amino acid but not the nucleotide sequence of the Escherichia coli araC gene conserved?
  Stoner,C.M. and Schleif,R. J. Mol. Biol. 154 (4), 649-652 (1982)
  PubMed, PubGet, HubMed
• Organization and nucleotide sequence of a new ribosomal operon in Escherichia coli containing the genes for ribosomal protein S2 and elongation factor Ts
  An,G., Bendiak,D.S., Mamelak,L.A. and Friesen,J.D. Nucleic Acids Res. 9 (16), 4163-4172 (1981)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions
  Mackie,G.A. J. Biol. Chem. 256 (15), 8177-8182 (1981)
  PubMed, PubGet, HubMed
• Purified lexA protein is a repressor of the recA and lexA genes
  Little,J.W., Mount,D.W. and Yanisch-Perron,C.R. Proc. Natl. Acad. Sci. U.S.A. 78 (7), 4199-4203 (1981)
  PubMed, PubGet, HubMed
• Factors governing the expression of a bacterial gene in mammalian cells
  Mulligan,R.C. and Berg,P. Mol. Cell. Biol. 1 (5), 449-459 (1981)
  PubMed, PubGet, HubMed
• Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli
  Lee,N.L., Gielow,W.O. and Wallace,R.G. Proc. Natl. Acad. Sci. U.S.A. 78 (2), 752-756 (1981)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the thrB gene of E. coli, and its two adjacent regions; the thrAB and thrBC junctions
  Cossart,P., Katinka,M. and Yaniv,M. Nucleic Acids Res. 9 (2), 339-347 (1981)
  PubMed, PubGet, HubMed
• DNA sequence of the araC regulatory gene from Escherichia coli B/r
  Miyada,C.G., Horwitz,A.H., Cass,L.G., Timko,J. and Wilcox,G. Nucleic Acids Res. 8 (22), 5267-5274 (1980)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the thrA gene of Escherichia coli
  Katinka,M., Cossart,P., Sibilli,L., Saint-Girons,I., Chalvignac,M.A., Le Bras,G., Cohen,G.N. and Yaniv,M. Proc. Natl. Acad. Sci. U.S.A. 77 (10), 5730-5733 (1980)
  PubMed, PubGet, HubMed
• The Escherichia coli L-arabinose operon: binding sites of the regulatory proteins and a mechanism of positive and negative regulation
  Ogden,S., Haggerty,D., Stoner,C.M., Kolodrubetz,D. and Schleif,R. Proc. Natl. Acad. Sci. U.S.A. 77 (6), 3346-3350 (1980)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the E coli gene coding for dihydrofolate reductase
  Smith,D.R. and Calvo,J.M. Nucleic Acids Res. 8 (10), 2255-2274 (1980)
  PubMed, PubGet, HubMed
• DNA sequence of the transposable element IS1
  Johnsrud,L. Mol. Gen. Genet. 169 (2), 213-218 (1979)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the L-arabinose regulatory region of Escherichia coli K12
  Smith,B.R. and Schleif,R. J. Biol. Chem. 253 (19), 6931-6933 (1978)
  PubMed, PubGet, HubMed
• DNA sequence of the araBAD promoter in Escherichia coli B/r
  Greenfield,L., Boone,T. and Wilcox,G. Proc. Natl. Acad. Sci. U.S.A. 75 (10), 4724-4728 (1978)
  PubMed, PubGet, HubMed
• Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA
  Young,R.A. and Steitz,J.A. Proc. Natl. Acad. Sci. U.S.A. 75 (8), 3593-3597 (1978)
  PubMed, PubGet, HubMed
• Nucleotide sequence of an insertion element, IS1
  Ohtsubo,H. and Ohtsubo,E. Proc. Natl. Acad. Sci. U.S.A. 75 (2), 615-619 (1978)
  PubMed, PubGet, HubMed
• Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli
  Musso,R., Di Lauro,R., Rosenberg,M. and de Crombrugghe,B. Proc. Natl. Acad. Sci. U.S.A. 74 (1), 106-110 (1977)
  PubMed, PubGet, HubMed

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