Escherichia coli UM146

MBRI

Genome Size: 5.11 megabases, Released Date: Sept. 24, 2010 #19879

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002167
4.8 MB
4650 CDS

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plasmid pUM146
CP002168
111.9 KB
133 CDS

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References

Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from ileal Crohn's disease biopsy tissue
Krause,D.O., Little,A.C., Dowd,S.E. and Bernstein,C.N. J. Bacteriol. 193 (2), 583 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli UM146

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Sequences

References

Related Genomes