Escherichia coli UTI89

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 5.21 megabases, GC Content: 50.6%, Released Date: April 5, 2006 #17003

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007946
4.8 MB
5021 CDS

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plasmid pUTI89
NC_007941
111.6 KB
145 CDS

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Circular View
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References

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
Chen,S.L., Hung,C.S., Xu,J., Reigstad,C.S., Magrini,V., Sabo,A., Blasiar,D., Bieri,T., Meyer,R.R., Ozersky,P., Armstrong,J.R., Fulton,R.S., Latreille,J.P., Spieth,J., Hooton,T.M., Mardis,E.R., Hultgren,S.J. and Gordon,J.I. Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5977-5982 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli UTI89

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Sequences

References

Related Genomes