Escherichia sp. 4_1_40B

GC Content: 50.5%, Released Date: Feb. 18, 2009 #18084

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACDM01000001
24.9 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000002
168.2 KB
152 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000003
217.4 KB
204 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000004
171.3 KB
149 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000005
17.0 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000006
27.0 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000007
1.7 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000008
14.6 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000009
6.4 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000010
368.1 KB
360 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000011
19.2 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000012
55.1 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000013
64.8 KB
66 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000014
36.9 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000015
2.7 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000016
175.8 KB
171 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000017
14.3 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000018
34.2 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000019
15.9 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000020
90.9 KB
93 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000021
61.7 KB
69 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000022
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000023
171.2 KB
158 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000024
37.1 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000025
10.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000026
1.6 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000027
58.4 KB
55 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000028
3.6 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000029
18.0 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000030
84.3 KB
78 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000031
18.3 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000032
41.0 KB
37 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000033
1.7 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000034
1.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000035
1.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000036
75.6 KB
71 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000037
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000038
37.4 KB
34 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000039
17.4 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000040
7.2 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000041
13.2 KB
21 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000042
38.6 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000043
144.4 KB
139 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000044
24.4 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000045
53.5 KB
50 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000046
976 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000047
2.0 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000048
5.9 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000049
23.7 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000050
18.2 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000051
30.5 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000052
111.8 KB
112 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000053
7.7 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000054
79.8 KB
72 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000055
105.2 KB
99 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000056
4.4 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000057
15.3 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000058
4.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000059
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000060
6.9 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000061
5.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000062
177.4 KB
166 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000063
58.8 KB
55 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000064
58.3 KB
61 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000065
44.5 KB
42 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000066
38.5 KB
39 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000067
109.9 KB
104 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000068
35.4 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000069
28.5 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000070
4.9 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000071
2.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000072
1.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000073
7.0 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000074
12.9 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000075
143.2 KB
142 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000076
9.3 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000077
3.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000078
3.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000079
36.6 KB
41 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000080
39.1 KB
41 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000081
27.6 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000082
3.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000083
139.3 KB
120 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000084
57.5 KB
53 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000085
155.7 KB
150 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000086
13.4 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000087
92.7 KB
83 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000088
38.6 KB
32 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000089
1.6 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000090
143.8 KB
141 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000091
40.2 KB
59 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000092
70.1 KB
67 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000093
52.5 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000094
86.2 KB
83 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000095
16.6 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000096
43.6 KB
57 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000097
4.6 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000098
9.5 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000099
4.2 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000100
30.0 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000101
1.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000102
1.8 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000103
2.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000104
1.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000105
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000106
1.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000107
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000108
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000109
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000110
1013 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000111
855 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000112
802 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000113
800 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000114
789 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000115
777 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000116
762 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000117
727 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000118
727 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000119
711 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000120
682 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000121
565 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000122
565 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000123
547 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000124
529 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000125
513 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACDM01000126
500 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Escherichia sp. 4_1_40B

Search Genome

Sequences

PubMed Search for Escherichia sp. 4_1_40B

Related Genomes