Eubacterium dolichum DSM 3991

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 38.1%, Released Date: June 6, 2007 #18086

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABAW02000001
2.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABAW02000002
35.6 KB
38 CDS

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whole genome shotgun sequence
NZ_ABAW02000003
43.4 KB
52 CDS

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whole genome shotgun sequence
NZ_ABAW02000004
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABAW02000005
8.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ABAW02000006
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABAW02000007
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABAW02000008
694 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABAW02000009
687 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABAW02000010
104.0 KB
94 CDS

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whole genome shotgun sequence
NZ_ABAW02000011
82.8 KB
89 CDS

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whole genome shotgun sequence
NZ_ABAW02000012
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABAW02000013
56.9 KB
59 CDS

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whole genome shotgun sequence
NZ_ABAW02000014
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABAW02000015
6.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ABAW02000016
5.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABAW02000017
195.5 KB
216 CDS

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whole genome shotgun sequence
NZ_ABAW02000018
356.6 KB
401 CDS

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whole genome shotgun sequence
NZ_ABAW02000019
284.7 KB
339 CDS

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whole genome shotgun sequence
NZ_ABAW02000020
54.5 KB
68 CDS

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whole genome shotgun sequence
NZ_ABAW02000021
176.7 KB
202 CDS

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whole genome shotgun sequence
NZ_ABAW02000022
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABAW02000023
872 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABAW02000024
443.1 KB
435 CDS

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whole genome shotgun sequence
NZ_ABAW02000025
272.4 KB
316 CDS

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Taxonomy

External Links

Eubacterium dolichum DSM 3991

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Sequences

PubMed Search for Eubacterium dolichum DSM 3991

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