Eubacterium limosum KIST612

Computational and Synthetic Biology Laboratory

Genome Size: 4.3 megabases, Released Date: Oct. 15, 2010 #19883

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002273
4.1 MB
4509 CDS

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References

Complete Genome Sequence of a Carbon Monoxide-Utilizing Acetogen, Eubacterium limosum KIST612
Roh,H., Ko,H.J., Kim,D., Choi,D.G., Park,S., Kim,S., Chang,I.S. and Choi,I.G. J. Bacteriol. 193 (1), 307-308 (2011)
PubMed, PubGet, HubMed

Taxonomy

External Links

Eubacterium limosum KIST612

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Sequences

References

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