Eubacterium rectale ATCC 33656

Center for Genome Sciences, Washington University School of Medicine , Laboratory of Jeffrey I. Gordon , Washington University Genome Sequencing Center

Genome Size: 3.4 megabases, Released Date: June 4, 2009 #17009

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012781
3.3 MB
3621 CDS

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References

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Mahowald,M.A., Rey,F.E., Seedorf,H., Turnbaugh,P.J., Fulton,R.S., Wollam,A., Shah,N., Wang,C., Magrini,V., Wilson,R.K., Cantarel,B.L., Coutinho,P.M., Henrissat,B., Crock,L.W., Russell,A., Verberkmoes,N.C., Hettich,R.L. and Gordon,J.I. Proc. Natl. Acad. Sci. U.S.A. 106 (14), 5859-5864 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Eubacterium rectale ATCC 33656

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Sequences

References

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