Ferroplasma acidarmanus fer1

DOE Joint Genome Institute

Genome Size: 1.87 megabases, GC Content: 36.5%, Released Date: July 10, 2002 #18093

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AABC05000001
52.0 KB
36 CDS

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whole genome shotgun sequence
NZ_AABC05000002
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AABC05000003
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AABC05000004
41.3 KB
43 CDS

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whole genome shotgun sequence
NZ_AABC05000005
134.0 KB
113 CDS

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whole genome shotgun sequence
NZ_AABC05000006
293 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABC05000007
975 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABC05000008
221.0 KB
243 CDS

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whole genome shotgun sequence
NZ_AABC05000009
227.2 KB
254 CDS

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whole genome shotgun sequence
NZ_AABC05000010
173.3 KB
202 CDS

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whole genome shotgun sequence
NZ_AABC05000011
314.1 KB
350 CDS

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whole genome shotgun sequence
NZ_AABC05000012
58.3 KB
68 CDS

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whole genome shotgun sequence
NZ_AABC05000013
87.7 KB
87 CDS

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whole genome shotgun sequence
NZ_AABC05000014
383.1 KB
392 CDS

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whole genome shotgun sequence
NZ_AABC05000015
189.6 KB
184 CDS

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whole genome shotgun sequence
NZ_AABC05000016
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AABC05000017
668 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABC05000018
2.2 KB
4 CDS

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References

Genome dynamics in a natural archaeal population
Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M. and Banfield,J.F. Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Ferroplasma acidarmanus fer1

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Sequences

References

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