Finegoldia magna ACS-171-V-Col3

J. Craig Venter Institute

Genome Size: 1.8 megabases, Released Date: Aug. 5, 2010 #20367

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00012, whole genome shotgun sequence
NZ_AECM01000001
1.5 KB
1 CDS

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contig00025, whole genome shotgun sequence
NZ_AECM01000002
1.5 KB
1 CDS

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contig00007, whole genome shotgun sequence
NZ_AECM01000003
153.5 KB
152 CDS

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contig00032, whole genome shotgun sequence
NZ_AECM01000004
13.1 KB
14 CDS

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contig00020, whole genome shotgun sequence
NZ_AECM01000005
271.1 KB
254 CDS

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contig00002, whole genome shotgun sequence
NZ_AECM01000006
48.9 KB
63 CDS

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contig00026, whole genome shotgun sequence
NZ_AECM01000007
41.2 KB
45 CDS

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contig00001, whole genome shotgun sequence
NZ_AECM01000008
722 bytes
0 CDS

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contig00021, whole genome shotgun sequence
NZ_AECM01000009
1.2 KB
0 CDS

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contig00042, whole genome shotgun sequence
NZ_AECM01000010
55.4 KB
38 CDS

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contig00027, whole genome shotgun sequence
NZ_AECM01000011
131.8 KB
123 CDS

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contig00018, whole genome shotgun sequence
NZ_AECM01000012
2.8 KB
0 CDS

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contig00014, whole genome shotgun sequence
NZ_AECM01000013
24.4 KB
26 CDS

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contig00038, whole genome shotgun sequence
NZ_AECM01000014
1.6 KB
0 CDS

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contig00035, whole genome shotgun sequence
NZ_AECM01000015
27.4 KB
23 CDS

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contig00029, whole genome shotgun sequence
NZ_AECM01000016
7.5 KB
9 CDS

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contig00006, whole genome shotgun sequence
NZ_AECM01000017
22.6 KB
33 CDS

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contig00037, whole genome shotgun sequence
NZ_AECM01000018
122.1 KB
124 CDS

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contig00003, whole genome shotgun sequence
NZ_AECM01000019
63.2 KB
52 CDS

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contig00010, whole genome shotgun sequence
NZ_AECM01000020
66.0 KB
61 CDS

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contig00013, whole genome shotgun sequence
NZ_AECM01000021
21.3 KB
23 CDS

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contig00024, whole genome shotgun sequence
NZ_AECM01000022
80.5 KB
68 CDS

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contig00015, whole genome shotgun sequence
NZ_AECM01000023
522 bytes
1 CDS

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contig00017, whole genome shotgun sequence
NZ_AECM01000024
1.7 KB
1 CDS

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contig00008, whole genome shotgun sequence
NZ_AECM01000025
286.5 KB
290 CDS

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contig00004, whole genome shotgun sequence
NZ_AECM01000026
56.0 KB
51 CDS

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contig00028, whole genome shotgun sequence
NZ_AECM01000027
53.9 KB
52 CDS

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contig00023, whole genome shotgun sequence
NZ_AECM01000028
55.9 KB
63 CDS

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contig00011, whole genome shotgun sequence
NZ_AECM01000029
95.0 KB
92 CDS

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contig00005, whole genome shotgun sequence
NZ_AECM01000030
77.2 KB
80 CDS

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Taxonomy

External Links

Finegoldia magna ACS-171-V-Col3

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Sequences

PubMed Search for Finegoldia magna ACS-171-V-Col3

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