Flavobacteria bacterium BBFL7

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 35.0%, Released Date: March 14, 2006 #18096

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAPD01000001
1.0 MB
901 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000002
511.6 KB
455 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000003
340.6 KB
313 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000004
203.1 KB
186 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000005
164.3 KB
144 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000006
163.0 KB
135 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000007
154.1 KB
120 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000008
130.2 KB
105 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000009
115.4 KB
105 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000010
86.7 KB
73 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000011
50.7 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000012
10.6 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000013
2.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000014
1.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000015
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000016
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAPD01000017
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Flavobacteria bacterium BBFL7

Search Genome

Sequences

PubMed Search for Flavobacteria bacterium BBFL7

Related Genomes