Flavobacteria bacterium MS024-3C

DOE Joint Genome Institute

GC Content: 38.7%, Released Date: March 16, 2009 #18098

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABVW01000001
536.5 KB
472 CDS

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whole genome shotgun sequence
NZ_ABVW01000002
178.1 KB
176 CDS

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whole genome shotgun sequence
NZ_ABVW01000003
99.8 KB
98 CDS

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whole genome shotgun sequence
NZ_ABVW01000004
93.7 KB
82 CDS

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whole genome shotgun sequence
NZ_ABVW01000005
88.4 KB
79 CDS

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whole genome shotgun sequence
NZ_ABVW01000006
72.8 KB
80 CDS

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whole genome shotgun sequence
NZ_ABVW01000007
66.6 KB
58 CDS

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whole genome shotgun sequence
NZ_ABVW01000008
48.2 KB
42 CDS

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whole genome shotgun sequence
NZ_ABVW01000009
45.7 KB
41 CDS

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whole genome shotgun sequence
NZ_ABVW01000010
38.5 KB
43 CDS

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whole genome shotgun sequence
NZ_ABVW01000011
36.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ABVW01000012
27.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ABVW01000013
23.9 KB
24 CDS

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whole genome shotgun sequence
NZ_ABVW01000014
22.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABVW01000015
22.3 KB
24 CDS

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whole genome shotgun sequence
NZ_ABVW01000016
21.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ABVW01000017
19.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABVW01000018
19.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABVW01000019
10.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ABVW01000020
4.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABVW01000021
3.4 KB
5 CDS

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Taxonomy

External Links

Flavobacteria bacterium MS024-3C

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Sequences

PubMed Search for Flavobacteria bacterium MS024-3C

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