Flavobacteriales bacterium ALC-1

J. Craig Venter Institute

GC Content: 32.4%, Released Date: Nov. 9, 2007 #18099

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

[offset=2625931] [len=1212026], whole genome shotgun sequence
NZ_ABHI01000001
1.2 MB
1060 CDS

Table view
Circular View
Artemis Viewer

[offset=92297] [len=1029779], whole genome shotgun sequence
NZ_ABHI01000002
1005.6 KB
910 CDS

Table view
Circular View
Artemis Viewer

[offset=1283845] [len=708642], whole genome shotgun sequence
NZ_ABHI01000003
692.0 KB
656 CDS

Table view
Circular View
Artemis Viewer

[offset=2163117] [len=462108], whole genome shotgun sequence
NZ_ABHI01000004
451.3 KB
425 CDS

Table view
Circular View
Artemis Viewer

[offset=1992507] [len=161788], whole genome shotgun sequence
NZ_ABHI01000005
158.0 KB
146 CDS

Table view
Circular View
Artemis Viewer

[offset=1178944] [len=104632], whole genome shotgun sequence
NZ_ABHI01000006
102.2 KB
103 CDS

Table view
Circular View
Artemis Viewer

[offset=0] [len=92277], whole genome shotgun sequence
NZ_ABHI01000007
90.1 KB
93 CDS

Table view
Circular View
Artemis Viewer

[offset=1124369] [len=54455], whole genome shotgun sequence
NZ_ABHI01000008
53.2 KB
52 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Flavobacteriales bacterium ALC-1

Search Genome

Sequences

PubMed Search for Flavobacteriales bacterium ALC-1

Related Genomes