Francisella tularensis subsp. holarctica FSC200

University of Washington

GC Content: 32.4%, Released Date: Nov. 21, 2006 #18104

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

sequence, whole genome shotgun sequence
NZ_AASP01000001
182.0 KB
213 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000002
175.3 KB
187 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000003
141.7 KB
139 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000004
95.0 KB
113 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000005
82.9 KB
86 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000006
73.3 KB
85 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000007
72.6 KB
82 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000008
65.3 KB
63 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000009
62.3 KB
76 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000010
62.2 KB
79 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000011
57.6 KB
74 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000012
57.3 KB
68 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000013
56.7 KB
64 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000014
56.0 KB
72 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000015
54.4 KB
61 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000016
50.4 KB
63 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000017
47.4 KB
57 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000018
44.5 KB
45 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000019
38.7 KB
42 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000020
34.9 KB
42 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000021
26.8 KB
33 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000022
25.5 KB
28 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000023
22.7 KB
24 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000024
22.4 KB
34 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000025
21.4 KB
33 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000026
16.5 KB
23 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000027
15.1 KB
16 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000028
14.5 KB
13 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000029
14.3 KB
13 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000030
12.1 KB
11 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000031
11.3 KB
18 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000032
8.5 KB
10 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000033
7.9 KB
7 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000034
6.4 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000035
5.0 KB
6 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000036
2.2 KB
3 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000037
2.0 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000038
1.9 KB
3 CDS

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sequence, whole genome shotgun sequence
NZ_AASP01000039
1.5 KB
3 CDS

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References

Potential source of Francisella tularensis live vaccine strain attenuation determined by genome comparison
Rohmer,L., Brittnacher,M., Svensson,K., Buckley,D., Haugen,E., Zhou,Y., Chang,J., Levy,R., Hayden,H., Forsman,M., Olson,M., Johansson,A., Kaul,R. and Miller,S.I. Infect. Immun. 74 (12), 6895-6906 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Francisella tularensis subsp. holarctica FSC200

Search Genome

Sequences

References

Related Genomes