Francisella tularensis subsp. holarctica FTNF002-00

BioHealthBase , Joint Genome Institute, Production Genomics Facility, Walnut Creek CA and Los Alamos National Laboratory, Los Alamos NM.

Genome Size: 1.9 megabases, GC Content: 32.2%, Released Date: Aug. 23, 2007 #17021

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_009749
1.8 MB
1580 CDS

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References

Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00
Barabote,R.D., Xie,G., Brettin,T.S., Hinrichs,S.H., Fey,P.D., Jay,J.J., Engle,J.L., Godbole,S.D., Noronha,J.M., Scheuermann,R.H., Zhou,L.W., Lion,C. and Dempsey,M.P. PLoS ONE 4 (9), E7041 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Francisella tularensis subsp. holarctica FTNF002-00

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Sequences

References

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