Colour by:

A - Percentage A content A3s - Percentage A content at synonymous 3rd codon positions AT skew - Value of (A-T)/(A+T), used to measure strand compositional asymmetry AT3s skew - Value of (A-T)/(A+T) at synonymous 3rd codon positions, used to measure strand compositional asymmetry Aromo - Frequence of aromatic amino acids (Phe, Tyr, Trp) in the hypothetical translated gene product Axis1 - Axis 1 from correspondence analysis of relative synonymous codon usage Axis2 - Axis 2 from correspondence analysis of relative synonymous codon usage Axis3 - Axis 3 from correspondence analysis of relative synonymous codon usage Axis4 - Axis 4 from correspondence analysis of relative synonymous codon usage C - Percentage C content C3s - Percentage C content at synonymous 3rd codon positions CAI - Codon Adaptation Index [Sharp and Li, 1987], a measure of codon usage optimisation in E. coli G - Percentage G content G3s - Percentage G content at synonymous 3rd codon positions GC - Percentage G+C content GC skew - Value of (G-C)/(G+C), used to measure strand compositional asymmetry GC3s - Percentage G+C content at synonymous 3rd codon positions GC3s skew - Value of (G-C)/(G+C) at synonymous 3rd codon positions, used to measure strand compositional asymmetry GT3s - Percentage G+T content at synonymous 3rd codon positions Gravy - General average hydropathicity score for hypothetical translated gene product Nc - Effective Number of Codons [Wright, 1990], a generic measure of codon usage bias T - Percentage T content T3s - Percentage T content at synonymous 3rd codon positions core - genome core CDS (within species) orthologues - CDS orthologue heat value (within species) unique - unique CDS (within species)