Francisella tularensis subsp. mediasiatica FSC147

DOE Joint Genome Institute , Swedish Defense Research Agency, Umea, Sweden , Los Alamos National Laboratory, Los Alamos, NM , Northern Arizona University, USA, Flagstaff , Swedish Defence Research Agency, Sweden, Umea

Genome Size: 1.9 megabases, GC Content: 32.3%, Released Date: May 7, 2008 #17023

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_010677
1.8 MB
1406 CDS

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References

Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen
Larsson,P., Elfsmark,D., Svensson,K., Wikstrom,P., Forsman,M., Brettin,T., Keim,P. and Johansson,A. PLoS Pathog. 5 (6), E1000472 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Francisella tularensis subsp. mediasiatica FSC147

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Sequences

References

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