Francisella tularensis subsp. tularensis FSC033

Broad Institute

Genome Size: 1.8 megabases, GC Content: 32.2%, Released Date: May 14, 2007 #14864

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000001
98.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000002
45.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000003
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000004
288.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000005
635.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000006
2.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000007
129.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000008
23.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000009
201 bytes
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000010
571 bytes
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000011
59.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000012
244.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000013
133.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000014
88.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AAYE01000015
49.5 KB
0 CDS

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Taxonomy

External Links

Francisella tularensis subsp. tularensis FSC033

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Sequences

PubMed Search for Francisella tularensis subsp. tularensis FSC033

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