Francisella tularensis subsp. tularensis FSC198

School of Biological Sciences, University of Birmingham, UK

Genome Size: 1.9 megabases, GC Content: 32.3%, Released Date: July 12, 2006 #17024

Completed genome

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

complete genome
NC_008245
1.8 MB
1605 CDS

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References

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4
Chaudhuri,R.R., Ren,C.P., Desmond,L., Vincent,G.A., Silman,N.J., Brehm,J.K., Elmore,M.J., Hudson,M.J., Forsman,M., Isherwood,K.E., Gurycova,D., Minton,N.P., Titball,R.W., Pallen,M.J. and Vipond,R. PLoS ONE 2 (4), E352 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Francisella tularensis subsp. tularensis FSC198

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Sequences

References

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