Gardnerella vaginalis AMD

Virginia Commonwealth University

Genome Size: 1.6 megabases, Released Date: May 26, 2010 #20384

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

n.contig010, whole genome shotgun sequence
NZ_ADAM01000001
84.8 KB
74 CDS

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n.contig001, whole genome shotgun sequence
NZ_ADAM01000002
554.0 KB
522 CDS

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n.contig002, whole genome shotgun sequence
NZ_ADAM01000003
50.1 KB
38 CDS

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n.contig003, whole genome shotgun sequence
NZ_ADAM01000004
5.8 KB
1 CDS

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n.contig004, whole genome shotgun sequence
NZ_ADAM01000005
86.1 KB
71 CDS

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n.contig005, whole genome shotgun sequence
NZ_ADAM01000006
77.3 KB
54 CDS

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n.contig006, whole genome shotgun sequence
NZ_ADAM01000007
124.4 KB
104 CDS

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n.contig007, whole genome shotgun sequence
NZ_ADAM01000008
105.1 KB
96 CDS

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n.contig008, whole genome shotgun sequence
NZ_ADAM01000009
259.6 KB
196 CDS

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n.contig009, whole genome shotgun sequence
NZ_ADAM01000010
185.7 KB
132 CDS

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n.contig011, whole genome shotgun sequence
NZ_ADAM01000011
162 bytes
0 CDS

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n.contig012, whole genome shotgun sequence
NZ_ADAM01000012
277 bytes
0 CDS

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n.contig013, whole genome shotgun sequence
NZ_ADAM01000013
311 bytes
1 CDS

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n.contig014, whole genome shotgun sequence
NZ_ADAM01000014
329 bytes
0 CDS

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n.contig015, whole genome shotgun sequence
NZ_ADAM01000015
402 bytes
0 CDS

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n.contig016, whole genome shotgun sequence
NZ_ADAM01000016
333 bytes
0 CDS

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n.contig017, whole genome shotgun sequence
NZ_ADAM01000017
132 bytes
0 CDS

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n.contig018, whole genome shotgun sequence
NZ_ADAM01000018
103 bytes
0 CDS

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n.contig019, whole genome shotgun sequence
NZ_ADAM01000019
364 bytes
0 CDS

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n.contig020, whole genome shotgun sequence
NZ_ADAM01000020
243 bytes
0 CDS

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n.contig021, whole genome shotgun sequence
NZ_ADAM01000021
171 bytes
0 CDS

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n.contig022, whole genome shotgun sequence
NZ_ADAM01000022
219 bytes
0 CDS

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n.contig023, whole genome shotgun sequence
NZ_ADAM01000023
336 bytes
0 CDS

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n.contig024, whole genome shotgun sequence
NZ_ADAM01000024
443 bytes
1 CDS

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n.contig025, whole genome shotgun sequence
NZ_ADAM01000025
280 bytes
1 CDS

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n.contig026, whole genome shotgun sequence
NZ_ADAM01000026
327 bytes
0 CDS

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n.contig027, whole genome shotgun sequence
NZ_ADAM01000027
513 bytes
1 CDS

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n.contig028, whole genome shotgun sequence
NZ_ADAM01000028
406 bytes
0 CDS

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n.contig029, whole genome shotgun sequence
NZ_ADAM01000029
440 bytes
1 CDS

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n.contig030, whole genome shotgun sequence
NZ_ADAM01000030
268 bytes
0 CDS

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n.contig031, whole genome shotgun sequence
NZ_ADAM01000031
431 bytes
0 CDS

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n.contig032, whole genome shotgun sequence
NZ_ADAM01000032
308 bytes
0 CDS

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n.contig033, whole genome shotgun sequence
NZ_ADAM01000033
421 bytes
0 CDS

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n.contig034, whole genome shotgun sequence
NZ_ADAM01000034
462 bytes
0 CDS

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n.contig035, whole genome shotgun sequence
NZ_ADAM01000035
455 bytes
0 CDS

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n.contig036, whole genome shotgun sequence
NZ_ADAM01000036
320 bytes
1 CDS

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n.contig037, whole genome shotgun sequence
NZ_ADAM01000037
449 bytes
0 CDS

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n.contig038, whole genome shotgun sequence
NZ_ADAM01000038
314 bytes
0 CDS

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n.contig039, whole genome shotgun sequence
NZ_ADAM01000039
298 bytes
0 CDS

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n.contig040, whole genome shotgun sequence
NZ_ADAM01000040
292 bytes
0 CDS

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n.contig041, whole genome shotgun sequence
NZ_ADAM01000041
358 bytes
0 CDS

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n.contig042, whole genome shotgun sequence
NZ_ADAM01000042
359 bytes
0 CDS

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n.contig043, whole genome shotgun sequence
NZ_ADAM01000043
327 bytes
1 CDS

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n.contig044, whole genome shotgun sequence
NZ_ADAM01000044
479 bytes
0 CDS

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n.contig045, whole genome shotgun sequence
NZ_ADAM01000045
335 bytes
0 CDS

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n.contig046, whole genome shotgun sequence
NZ_ADAM01000046
249 bytes
0 CDS

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n.contig047, whole genome shotgun sequence
NZ_ADAM01000047
628 bytes
1 CDS

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n.contig048, whole genome shotgun sequence
NZ_ADAM01000048
377 bytes
0 CDS

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n.contig049, whole genome shotgun sequence
NZ_ADAM01000049
356 bytes
0 CDS

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n.contig050, whole genome shotgun sequence
NZ_ADAM01000050
370 bytes
0 CDS

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n.contig051, whole genome shotgun sequence
NZ_ADAM01000051
414 bytes
1 CDS

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n.contig052, whole genome shotgun sequence
NZ_ADAM01000052
308 bytes
0 CDS

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n.contig053, whole genome shotgun sequence
NZ_ADAM01000053
320 bytes
0 CDS

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n.contig054, whole genome shotgun sequence
NZ_ADAM01000054
456 bytes
1 CDS

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n.contig055, whole genome shotgun sequence
NZ_ADAM01000055
302 bytes
1 CDS

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n.contig056, whole genome shotgun sequence
NZ_ADAM01000056
421 bytes
0 CDS

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n.contig057, whole genome shotgun sequence
NZ_ADAM01000057
448 bytes
0 CDS

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n.contig058, whole genome shotgun sequence
NZ_ADAM01000058
443 bytes
0 CDS

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n.contig059, whole genome shotgun sequence
NZ_ADAM01000059
440 bytes
0 CDS

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n.contig060, whole genome shotgun sequence
NZ_ADAM01000060
331 bytes
0 CDS

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n.contig061, whole genome shotgun sequence
NZ_ADAM01000061
295 bytes
0 CDS

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n.contig062, whole genome shotgun sequence
NZ_ADAM01000062
333 bytes
0 CDS

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n.contig063, whole genome shotgun sequence
NZ_ADAM01000063
399 bytes
0 CDS

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n.contig064, whole genome shotgun sequence
NZ_ADAM01000064
238 bytes
0 CDS

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n.contig065, whole genome shotgun sequence
NZ_ADAM01000065
341 bytes
1 CDS

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n.contig066, whole genome shotgun sequence
NZ_ADAM01000066
362 bytes
0 CDS

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n.contig067, whole genome shotgun sequence
NZ_ADAM01000067
381 bytes
1 CDS

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n.contig068, whole genome shotgun sequence
NZ_ADAM01000068
343 bytes
0 CDS

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n.contig069, whole genome shotgun sequence
NZ_ADAM01000069
434 bytes
1 CDS

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n.contig070, whole genome shotgun sequence
NZ_ADAM01000070
397 bytes
0 CDS

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n.contig071, whole genome shotgun sequence
NZ_ADAM01000071
490 bytes
1 CDS

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n.contig072, whole genome shotgun sequence
NZ_ADAM01000072
433 bytes
2 CDS

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n.contig073, whole genome shotgun sequence
NZ_ADAM01000073
429 bytes
1 CDS

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n.contig074, whole genome shotgun sequence
NZ_ADAM01000074
263 bytes
0 CDS

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n.contig075, whole genome shotgun sequence
NZ_ADAM01000075
403 bytes
0 CDS

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n.contig076, whole genome shotgun sequence
NZ_ADAM01000076
336 bytes
0 CDS

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n.contig077, whole genome shotgun sequence
NZ_ADAM01000077
269 bytes
0 CDS

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n.contig078, whole genome shotgun sequence
NZ_ADAM01000078
365 bytes
0 CDS

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n.contig079, whole genome shotgun sequence
NZ_ADAM01000079
373 bytes
0 CDS

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n.contig080, whole genome shotgun sequence
NZ_ADAM01000080
382 bytes
0 CDS

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n.contig081, whole genome shotgun sequence
NZ_ADAM01000081
414 bytes
0 CDS

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n.contig082, whole genome shotgun sequence
NZ_ADAM01000082
395 bytes
0 CDS

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n.contig083, whole genome shotgun sequence
NZ_ADAM01000083
361 bytes
0 CDS

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n.contig084, whole genome shotgun sequence
NZ_ADAM01000084
328 bytes
0 CDS

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n.contig085, whole genome shotgun sequence
NZ_ADAM01000085
260 bytes
0 CDS

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n.contig086, whole genome shotgun sequence
NZ_ADAM01000086
456 bytes
1 CDS

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n.contig087, whole genome shotgun sequence
NZ_ADAM01000087
420 bytes
0 CDS

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n.contig088, whole genome shotgun sequence
NZ_ADAM01000088
348 bytes
0 CDS

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n.contig089, whole genome shotgun sequence
NZ_ADAM01000089
458 bytes
2 CDS

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n.contig090, whole genome shotgun sequence
NZ_ADAM01000090
367 bytes
1 CDS

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n.contig091, whole genome shotgun sequence
NZ_ADAM01000091
377 bytes
0 CDS

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n.contig092, whole genome shotgun sequence
NZ_ADAM01000092
375 bytes
0 CDS

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n.contig093, whole genome shotgun sequence
NZ_ADAM01000093
400 bytes
0 CDS

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n.contig094, whole genome shotgun sequence
NZ_ADAM01000094
431 bytes
0 CDS

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n.contig095, whole genome shotgun sequence
NZ_ADAM01000095
786 bytes
1 CDS

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n.contig096, whole genome shotgun sequence
NZ_ADAM01000096
353 bytes
0 CDS

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n.contig097, whole genome shotgun sequence
NZ_ADAM01000097
291 bytes
0 CDS

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n.contig098, whole genome shotgun sequence
NZ_ADAM01000098
266 bytes
0 CDS

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n.contig099, whole genome shotgun sequence
NZ_ADAM01000099
249 bytes
0 CDS

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n.contig100, whole genome shotgun sequence
NZ_ADAM01000100
255 bytes
0 CDS

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n.contig101, whole genome shotgun sequence
NZ_ADAM01000101
311 bytes
1 CDS

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n.contig102, whole genome shotgun sequence
NZ_ADAM01000102
387 bytes
0 CDS

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n.contig103, whole genome shotgun sequence
NZ_ADAM01000103
388 bytes
0 CDS

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n.contig104, whole genome shotgun sequence
NZ_ADAM01000104
326 bytes
0 CDS

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n.contig105, whole genome shotgun sequence
NZ_ADAM01000105
358 bytes
0 CDS

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n.contig106, whole genome shotgun sequence
NZ_ADAM01000106
416 bytes
0 CDS

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n.contig107, whole genome shotgun sequence
NZ_ADAM01000107
291 bytes
0 CDS

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n.contig108, whole genome shotgun sequence
NZ_ADAM01000108
176 bytes
0 CDS

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n.contig109, whole genome shotgun sequence
NZ_ADAM01000109
308 bytes
0 CDS

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n.contig110, whole genome shotgun sequence
NZ_ADAM01000110
344 bytes
0 CDS

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n.contig111, whole genome shotgun sequence
NZ_ADAM01000111
171 bytes
0 CDS

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n.contig112, whole genome shotgun sequence
NZ_ADAM01000112
102 bytes
0 CDS

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n.contig113, whole genome shotgun sequence
NZ_ADAM01000113
223 bytes
0 CDS

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n.contig114, whole genome shotgun sequence
NZ_ADAM01000114
176 bytes
0 CDS

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n.contig115, whole genome shotgun sequence
NZ_ADAM01000115
223 bytes
0 CDS

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n.contig116, whole genome shotgun sequence
NZ_ADAM01000116
255 bytes
1 CDS

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n.contig117, whole genome shotgun sequence
NZ_ADAM01000117
148 bytes
0 CDS

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References

Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies
Harwich,M.D. Jr., Alves,J.M., Buck,G.A., Strauss,J.F. III, Patterson,J.L., Oki,A.T., Girerd,P.H. and Jefferson,K.K. BMC Genomics 11, 375 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Gardnerella vaginalis AMD

Search Genome

Sequences

References

Related Genomes