Geobacillus sp. G11MC16

DOE Joint Genome Institute

GC Content: 48.8%, Released Date: Aug. 15, 2008 #18119

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABVH01000001
572.7 KB
617 CDS

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whole genome shotgun sequence
NZ_ABVH01000002
428.2 KB
440 CDS

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whole genome shotgun sequence
NZ_ABVH01000003
361.2 KB
407 CDS

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whole genome shotgun sequence
NZ_ABVH01000004
250.0 KB
238 CDS

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whole genome shotgun sequence
NZ_ABVH01000005
230.4 KB
232 CDS

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whole genome shotgun sequence
NZ_ABVH01000006
202.9 KB
229 CDS

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whole genome shotgun sequence
NZ_ABVH01000007
174.0 KB
187 CDS

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whole genome shotgun sequence
NZ_ABVH01000008
167.5 KB
173 CDS

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whole genome shotgun sequence
NZ_ABVH01000009
154.1 KB
155 CDS

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whole genome shotgun sequence
NZ_ABVH01000010
150.3 KB
138 CDS

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whole genome shotgun sequence
NZ_ABVH01000011
99.5 KB
90 CDS

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whole genome shotgun sequence
NZ_ABVH01000012
88.4 KB
77 CDS

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whole genome shotgun sequence
NZ_ABVH01000013
67.2 KB
62 CDS

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whole genome shotgun sequence
NZ_ABVH01000014
66.2 KB
66 CDS

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whole genome shotgun sequence
NZ_ABVH01000015
64.5 KB
72 CDS

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whole genome shotgun sequence
NZ_ABVH01000016
51.2 KB
55 CDS

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whole genome shotgun sequence
NZ_ABVH01000017
46.7 KB
55 CDS

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whole genome shotgun sequence
NZ_ABVH01000018
43.6 KB
52 CDS

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whole genome shotgun sequence
NZ_ABVH01000019
40.1 KB
34 CDS

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whole genome shotgun sequence
NZ_ABVH01000020
37.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ABVH01000021
36.5 KB
49 CDS

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whole genome shotgun sequence
NZ_ABVH01000022
33.9 KB
49 CDS

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whole genome shotgun sequence
NZ_ABVH01000023
26.9 KB
27 CDS

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whole genome shotgun sequence
NZ_ABVH01000024
19.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABVH01000025
13.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABVH01000026
11.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABVH01000027
7.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABVH01000028
6.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABVH01000029
4.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABVH01000030
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABVH01000031
2.5 KB
1 CDS

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Taxonomy

External Links

Geobacillus sp. G11MC16

Search Genome

Sequences

PubMed Search for Geobacillus sp. G11MC16

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