Geobacillus sp. Y412MC52

DOE Joint Genome Institute

GC Content: 52.4%, Released Date: May 1, 2009 #18121

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACNM01000001
332.5 KB
335 CDS

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whole genome shotgun sequence
NZ_ACNM01000002
227.9 KB
263 CDS

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whole genome shotgun sequence
NZ_ACNM01000003
179.7 KB
187 CDS

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whole genome shotgun sequence
NZ_ACNM01000004
174.8 KB
189 CDS

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whole genome shotgun sequence
NZ_ACNM01000005
159.3 KB
167 CDS

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whole genome shotgun sequence
NZ_ACNM01000006
141.8 KB
150 CDS

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whole genome shotgun sequence
NZ_ACNM01000007
139.6 KB
133 CDS

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whole genome shotgun sequence
NZ_ACNM01000008
137.8 KB
134 CDS

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whole genome shotgun sequence
NZ_ACNM01000009
94.8 KB
109 CDS

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whole genome shotgun sequence
NZ_ACNM01000010
90.8 KB
97 CDS

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whole genome shotgun sequence
NZ_ACNM01000011
85.3 KB
109 CDS

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whole genome shotgun sequence
NZ_ACNM01000012
83.8 KB
78 CDS

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whole genome shotgun sequence
NZ_ACNM01000013
78.9 KB
83 CDS

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whole genome shotgun sequence
NZ_ACNM01000014
74.1 KB
65 CDS

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whole genome shotgun sequence
NZ_ACNM01000015
73.3 KB
76 CDS

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whole genome shotgun sequence
NZ_ACNM01000016
71.5 KB
82 CDS

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whole genome shotgun sequence
NZ_ACNM01000017
69.1 KB
67 CDS

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whole genome shotgun sequence
NZ_ACNM01000018
65.3 KB
73 CDS

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whole genome shotgun sequence
NZ_ACNM01000019
62.8 KB
57 CDS

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whole genome shotgun sequence
NZ_ACNM01000020
56.6 KB
56 CDS

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whole genome shotgun sequence
NZ_ACNM01000021
54.8 KB
58 CDS

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whole genome shotgun sequence
NZ_ACNM01000022
48.2 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNM01000023
47.9 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNM01000024
47.2 KB
52 CDS

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whole genome shotgun sequence
NZ_ACNM01000025
46.3 KB
42 CDS

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whole genome shotgun sequence
NZ_ACNM01000026
46.0 KB
47 CDS

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whole genome shotgun sequence
NZ_ACNM01000027
44.9 KB
49 CDS

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whole genome shotgun sequence
NZ_ACNM01000028
43.1 KB
44 CDS

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whole genome shotgun sequence
NZ_ACNM01000029
42.0 KB
37 CDS

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whole genome shotgun sequence
NZ_ACNM01000030
38.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ACNM01000031
36.6 KB
39 CDS

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whole genome shotgun sequence
NZ_ACNM01000032
36.4 KB
40 CDS

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whole genome shotgun sequence
NZ_ACNM01000033
36.1 KB
36 CDS

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whole genome shotgun sequence
NZ_ACNM01000034
35.3 KB
35 CDS

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whole genome shotgun sequence
NZ_ACNM01000035
30.6 KB
24 CDS

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whole genome shotgun sequence
NZ_ACNM01000036
29.7 KB
31 CDS

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whole genome shotgun sequence
NZ_ACNM01000037
28.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ACNM01000038
27.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ACNM01000039
23.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ACNM01000040
23.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ACNM01000041
22.0 KB
36 CDS

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whole genome shotgun sequence
NZ_ACNM01000042
19.9 KB
18 CDS

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whole genome shotgun sequence
NZ_ACNM01000043
19.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACNM01000044
17.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ACNM01000045
16.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNM01000046
16.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ACNM01000047
15.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ACNM01000048
15.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ACNM01000049
14.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ACNM01000050
13.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACNM01000051
11.2 KB
15 CDS

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whole genome shotgun sequence
NZ_ACNM01000052
11.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000053
11.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACNM01000054
9.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000055
9.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNM01000056
9.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNM01000057
8.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNM01000058
8.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACNM01000059
8.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000060
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNM01000061
7.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNM01000062
6.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000063
4.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000064
4.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNM01000065
4.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACNM01000066
4.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNM01000067
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACNM01000068
3.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACNM01000069
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNM01000070
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNM01000071
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACNM01000072
2.0 KB
3 CDS

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Taxonomy

External Links

Geobacillus sp. Y412MC52

Search Genome

Sequences

PubMed Search for Geobacillus sp. Y412MC52

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