Geobacillus thermodenitrificans NG80-2

TEDA School of Biological Sciences and Biotechnology, Nankai University

Genome Size: 3.66 megabases, GC Content: 48.9%, Released Date: March 29, 2007 #17037

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_009328
3.4 MB
3392 CDS

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plasmid pLW1071
NC_009329
56.3 KB
53 CDS

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References

Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
Feng,L., Wang,W., Cheng,J., Ren,Y., Zhao,G., Gao,C., Tang,Y., Liu,X., Han,W., Peng,X., Liu,R. and Wang,L. Proc. Natl. Acad. Sci. U.S.A. 104 (13), 5602-5607 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Geobacillus thermodenitrificans NG80-2

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Sequences

References

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